View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_109 (Length: 212)
Name: NF20816_low_109
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 3746599 - 3746757
Alignment:
| Q |
29 |
aagcatttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaatttcacactctcttg |
128 |
Q |
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| T |
3746599 |
aagcatttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaatttcacactctcttg |
3746698 |
T |
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| Q |
129 |
atactaccatcattttcattactaatgacagttattacgaatgacatagtaatcctacc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3746699 |
atactaccatcattttcattactaatgacagttattacgaatgacatagtaatactacc |
3746757 |
T |
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