View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_12 (Length: 605)
Name: NF20816_low_12
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_12 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0517 (1 HSPs) |
| | |
|
| [»] scaffold0166 (1 HSPs) |
| | |
|
| [»] scaffold0165 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 4 - 501
Target Start/End: Complemental strand, 10111918 - 10111424
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||| |||||||| |
|
|
| T |
10111918 |
gaaagaaaaaatcaaacctttatcaaattagtagttgctatcatgcttaattctgatgcagcgcctcattggtgggga-aaatttcattgactgttagct |
10111820 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaagatgacattgatctccttcaaaggcaaacaaatcaaatcttttacaaaaggtttactaatgtctttaattaa |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10111819 |
atgtgctaaacagagtaccaaaaactaagatgacattgatctccttcaaaggcaaacaaatcaaatcttttacaaaaggtttactgctgtctttaattaa |
10111720 |
T |
|
| Q |
204 |
ctcacaatccttaccatgaccacatatttgtttgtacttgaagggataaatgttacataagaaatttcaacttaccaacacaatgataagcaataaatga |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10111719 |
ctcacaatccttaccatgaccacatatttgtttgtacttgaagggataaatgtgacataagaaatttcaacttgccaacacaatgataagcaataaatga |
10111620 |
T |
|
| Q |
304 |
ataccttgcaaccaaatcataaacaacgaccaagagta-tatatcctcaaattccgatgctttattagttcaacacaaagcaaacacaaaatcttttaca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
10111619 |
ataccttgcaaccaaatcataaacaacgaccaagagtattatatcctcaaattccgatgct---ttagttcaagacaaagcaaacacaaagttttttaca |
10111523 |
T |
|
| Q |
403 |
aattattggcttgagattcttcattttaacctagcttagcacacatgaaacaaatgaaatctatttcattccgtgctagccttcaaagaaataactgtg |
501 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10111522 |
aatgattggcttgagattcttcattttaacctagcttggcacacatgaaacaaatgaaatctatttcattccgtgctagccttcaaagaaataattgtg |
10111424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 10111399 - 10111306
Alignment:
| Q |
494 |
taactgtgtgttgatcaatagaacaacaaaaatttgaacaatagagacatacctatgaaaaatatataattgcaagtaaattccataaacataa |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10111399 |
taactgtgtgttgatcaatagaacaacaaaaatttgaacaatagagacatatatatgaaaaatatataattgcaagtaaattacataaacataa |
10111306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 40002246 - 40002117
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
40002246 |
gaaagaaaaaatagaacctttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
40002147 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
40002146 |
atgtgctaaacagagtacccaaaacaaaga |
40002117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 13698515 - 13698386
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
13698515 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
13698416 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
13698415 |
atgtgctaaacagagtacccaaaacaaaga |
13698386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21301923 - 21302052
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
21301923 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
21302022 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
21302023 |
atgtgctaaacagagtacccaaaacaaaga |
21302052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 54346380 - 54346251
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
54346380 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
54346281 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
54346280 |
atgtgctaaacagagtacccaaaacaaaga |
54346251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 8982375 - 8982504
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| | |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
8982375 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccgaagcagcgcctcattggtggggagaaattttattgactgtttgct |
8982474 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |
|
|
| T |
8982475 |
atgttctaaacagagtacccaaaacaaaga |
8982504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 36357318 - 36357195
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| | |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
36357318 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccagagcagcgcctcattggtggggagaaattttattgactgtttgct |
36357219 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaa |
127 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
36357218 |
atgtgctaaacagagttcccaaaa |
36357195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 5043 - 4914
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
5043 |
gaaagaaaaaatcgaacctttaccgaattagtagttgctatcatgcttaattctggtgcagcgcctcatttgtggggggaaattttattgactgttagct |
4944 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |
|
|
| T |
4943 |
atgtgctaaacggagtacccaagactaaga |
4914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13584807 - 13584936
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
13584807 |
gaaagaaagaatcgaacctttaccgaactagtagttgctatcatgcttaattctggtgcagcgcctcattggtggggggaaattttattgactgttagct |
13584906 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
13584907 |
atgtgctaaacagagtacccaaaacgaaga |
13584936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 24773448 - 24773576
Alignment:
| Q |
5 |
aaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagcta |
104 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| |||| |
|
|
| T |
24773448 |
aaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgcta |
24773547 |
T |
|
| Q |
105 |
tgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
24773548 |
tgtgctaaacagagtacccaaaacaaaga |
24773576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 41856591 - 41856467
Alignment:
| Q |
9 |
aaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagctatgtg |
108 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| | |||||||||||||| |||||||||||||| ||||| ||||||||||||| |||| |||||||| |
|
|
| T |
41856591 |
aaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattctggagcagcgcctcattggtggggagaaattttattgactgtttgctatgtg |
41856492 |
T |
|
| Q |
109 |
ctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
41856491 |
ctaaacagagtacccaaaacaaaga |
41856467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 42022984 - 42022860
Alignment:
| Q |
9 |
aaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagctatgtg |
108 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| |||||||| |
|
|
| T |
42022984 |
aaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgctatgtg |
42022885 |
T |
|
| Q |
109 |
ctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||| |||||||||||| |||| |
|
|
| T |
42022884 |
ctaaacacagtacccaaaacaaaga |
42022860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 17508073 - 17507950
Alignment:
| Q |
10 |
aaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagctatgtgc |
109 |
Q |
| |
|
|||||| |||| |||||| | ||||||||||| | |||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
17508073 |
aaaaatagaacgtttaccgagttagtagttgcaacaatgcttaatttcggagcagcgcctcattggtggggagaaattttattgactgtttgctatgtgc |
17507974 |
T |
|
| Q |
110 |
taaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
17507973 |
taaacagagtacccaaaacaaaga |
17507950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19433451 - 19433322
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
19433451 |
gaaagaaagaatcgaacttttaccgaattagtagttgctataatgcttaattctggtgcaacgcctcattggtgggggaaaattttattgactgttagct |
19433352 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19433351 |
atgtgctaaacagagtacccaaaactaaga |
19433322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19569601 - 19569472
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
19569601 |
gaaagaaagaatcgaacttttaccgaattagtagttgctataatgcttaattctggtgcaacgcctcattggtgggggaaaattttattgactgttagct |
19569502 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19569501 |
atgtgctaaacagagtacccaaaactaaga |
19569472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21646172 - 21646301
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
21646172 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
21646271 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
21646272 |
atgtgctaaacagagtacccaaaacaaaga |
21646301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 32013703 - 32013574
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
32013703 |
gaaagaaaaaatagaacatttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
32013604 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |
|
|
| T |
32013603 |
atgtgctaaacagagttcccaaaacaaaga |
32013574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 17284936 - 17285064
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
17284936 |
gaaagaaaaaatcgaacctttaccgaattagtaggtgctatcatgcttaattctggtgcagcgcctcattggt-gggggaaattttattgactgttagct |
17285034 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |
|
|
| T |
17285035 |
atgtgctaaacagactgcccaaaactaaga |
17285064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 10491143 - 10491015
Alignment:
| Q |
5 |
aaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagcta |
104 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10491143 |
aaagaaaaaatcgaacttttaccgaattagtagttgctatcatgcttaattatggtgcagcgcctcattggtggggggaaattttattgactgttagcta |
10491044 |
T |
|
| Q |
105 |
tgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||| ||| |||||||||||||| |
|
|
| T |
10491043 |
tgtgctaaatggagcacccaaaactaaga |
10491015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 22700336 - 22700465
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
22700336 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
22700435 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
22700436 |
atgtgctaaacagagtacccaaaacaaaga |
22700465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1568 - 1439
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
1568 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
1469 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
1468 |
atgtgctaaacagagtacccaaaacaaaga |
1439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15831 - 15960
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
15831 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
15930 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
15931 |
atgtgctaaacagagtacccaaaacaaaga |
15960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0165 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0165
Description:
Target: scaffold0165; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 14990 - 14861
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
14990 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
14891 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
14890 |
atgtgctaaacagagtacccaaaacaaaga |
14861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 29550 - 29421
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
29550 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
29451 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
29450 |
atgtgctaaacagagtacccaaaacaaaga |
29421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 33241180 - 33241051
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
33241180 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
33241081 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
33241080 |
atgtgctaaacagagtacccaaaacaaaga |
33241051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 47996977 - 47996848
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
47996977 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
47996878 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
47996877 |
atgtgctaaacagagtacccaaaacaaaga |
47996848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 17498835 - 17498785
Alignment:
| Q |
83 |
aaattttattgattgttagctatgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
17498835 |
aaattttattgactgtttgctatgtgctaaacagagtacctaaaacaaaga |
17498785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 17554379 - 17554429
Alignment:
| Q |
83 |
aaattttattgattgttagctatgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
17554379 |
aaattttattgactgtttgctatgtgctaaacagagtacctaaaacaaaga |
17554429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 3479037 - 3479166
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
3479037 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
3479136 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
3479137 |
atgtgctaaacagagtacccaaaacaaaga |
3479166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15765109 - 15765238
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
15765109 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
15765208 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
15765209 |
atgtgctaaacagagtacccaaaacaaaga |
15765238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17362082 - 17361953
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
17362082 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
17361983 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
17361982 |
atgtgctaaacagagtacccaaaacaaaga |
17361953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17366724 - 17366595
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
17366724 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
17366625 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
17366624 |
atgtgctaaacagagtacccaaaacaaaga |
17366595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 20092740 - 20092869
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
20092740 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
20092839 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
20092840 |
atgtgctaaacagagtacccaaaacaaaga |
20092869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 42725538 - 42725667
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
42725538 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
42725637 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
42725638 |
atgtgctaaacagagtacccaaaacaaaga |
42725667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 44756690 - 44756819
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
44756690 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
44756789 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
44756790 |
atgtgctaaacagagtacccaaaacaaaga |
44756819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 40035849 - 40035975
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||| | |
|
|
| T |
40035849 |
gaaagaaaaaatagaacctttaccgaattagtagttgttatcatgcttaatttcagtgcatcgcctcattggtcgggagaaattttattgattgttttcc |
40035948 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaacta |
130 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40035949 |
atgtgctaaacagagtacccaaaacta |
40035975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 27568763 - 27568706
Alignment:
| Q |
9 |
aaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcg |
66 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
27568763 |
aaaaaatataacctttaccgaattattagttgctatcatgcttaattccgttgcagcg |
27568706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27714448 - 27714319
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
27714448 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
27714349 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
27714348 |
atgtgctaaacagagtacccaaaacaaaga |
27714319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 37406506 - 37406635
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| | ||||||||||| | |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
37406506 |
gaaagaaaaaatagaacgtttaccgaattagtagttgcaacaatgcttaattccgaagcagcgcctcattggtggggagaaattttattgactgtttgct |
37406605 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
37406606 |
atgtgctaaacagagtacccaaaacaaaga |
37406635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 5728122 - 5727993
Alignment:
| Q |
4 |
gaaagaaaaaatcgaacctttaccaaattagtagttgctatcatgcttaattctggtgcagcgcctcattgatggggggaaattttattgattgttagct |
103 |
Q |
| |
|
|||||||||||| ||| |||| | ||||||||||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||| |
|
|
| T |
5728122 |
gaaagaaaaaatagaatgtttatcgaattagtagttgcaacaatgcttaattccggagcagcgcctcattggtggggagaaattttattgactgtttgct |
5728023 |
T |
|
| Q |
104 |
atgtgctaaacagagtacccaaaactaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
5728022 |
atgtgctaaacagagtacccaaaacaaaga |
5727993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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