View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_13 (Length: 586)

Name: NF20816_low_13
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_13
NF20816_low_13
[»] chr8 (8 HSPs)
chr8 (1-464)||(4049663-4050127)
chr8 (462-567)||(4049518-4049623)
chr8 (359-401)||(39866737-39866779)
chr8 (291-398)||(9700029-9700138)
chr8 (280-390)||(11569379-11569491)
chr8 (468-511)||(36172434-36172477)
chr8 (296-353)||(24326106-24326163)
chr8 (313-398)||(26410307-26410395)
[»] chr6 (2 HSPs)
chr6 (358-400)||(9027604-9027646)
chr6 (358-398)||(27909640-27909680)
[»] chr4 (3 HSPs)
chr4 (291-398)||(33534102-33534211)
chr4 (359-398)||(8468976-8469015)
chr4 (358-398)||(1137740-1137780)
[»] chr3 (5 HSPs)
chr3 (283-353)||(22667478-22667548)
chr3 (283-353)||(22724117-22724187)
chr3 (358-398)||(21862177-21862217)
chr3 (365-397)||(24785290-24785322)
chr3 (358-398)||(37825150-37825190)
[»] chr7 (8 HSPs)
chr7 (360-401)||(4966181-4966222)
chr7 (313-387)||(33894666-33894742)
chr7 (291-338)||(8094396-8094443)
chr7 (290-353)||(30496780-30496843)
chr7 (365-398)||(27378837-27378870)
chr7 (366-398)||(37064230-37064262)
chr7 (358-398)||(45901181-45901221)
chr7 (358-398)||(46082064-46082104)
[»] chr1 (8 HSPs)
chr1 (291-398)||(10199341-10199450)
chr1 (313-398)||(6279427-6279514)
chr1 (291-377)||(32515374-32515462)
chr1 (358-396)||(28689454-28689492)
chr1 (317-401)||(38170649-38170735)
chr1 (358-398)||(11639418-11639458)
chr1 (358-398)||(27140506-27140546)
chr1 (358-398)||(46252684-46252724)
[»] chr2 (6 HSPs)
chr2 (313-398)||(38078365-38078452)
chr2 (358-401)||(1160673-1160716)
chr2 (358-396)||(11063518-11063556)
chr2 (296-398)||(35329756-35329860)
chr2 (358-398)||(1160742-1160782)
chr2 (284-352)||(25609872-25609940)
[»] chr5 (3 HSPs)
chr5 (360-398)||(8177536-8177574)
chr5 (358-398)||(10638537-10638577)
chr5 (296-352)||(17259293-17259349)
[»] scaffold0153 (2 HSPs)
scaffold0153 (358-398)||(6496-6536)
scaffold0153 (358-398)||(13516-13556)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 4050127 - 4049663
Alignment:
Q  1 aaacggtatctcgatgattactagttgcttcttttctgttannnnnnn--gtaaggaaattactcatgaatgccctattatcaggaatttatccttgaga 98  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4050127 aaacggtatctcgatgattactagttgcttcttttctgttatttttttttgtaaggaaattattcatgaatgccctattatcaggaatttatccttgaga 4050028  T
Q  99 aaagcagaaaaagaagaagaacaaagagctaggagtgatatcctcaagaagctagagcaggataaggtatagaactgattttccaaatatttcttttaag 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4050027 aaagcagaaaaagaagaagaacaaagagctaggagtgacatcctcaagaagctagagcaggataaggtatagaactgattttccaaatatttcttt-aag 4049929  T
Q  199 agtgtgaatccctatttttgatctagtatattgtgtttgacaaatttcattctcaaattcattttaagtttgcacctgttctttgattggcctattcgag 298  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049928 agtgtgaatcactatttttgatctagtatattgtgtttgacaaatttcattttcaaattcattttaagtttgcacctgttctttgattggcctattcgag 4049829  T
Q  299 cttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacagatatacatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049828 cttatctagtatcataagcacttgtgagactacttgagagtgcttatggaaacagatatacatgtccataagttgttttgagtttattttcataagctct 4049729  T
Q  399 tcacctcagaatagcttattttcataaactctacataatagcttcttctaactatgtcaacctctt 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049728 tcacctcagaatagcttattttcataaactctacataatagcttcttctaactatgtcaacctctt 4049663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 462 - 567
Target Start/End: Complemental strand, 4049623 - 4049518
Alignment:
Q  462 ctttgcctttacagttaaatagaaggtctatacttggattacctttagaaagtcaagcaaatgtgagatcaccagccattgcgataaagcaagaaaaggt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4049623 ctttgcctttacagttaaatagaaggtctatacttggattacctttagaaagtcaagcaaatgtgagatcaccagccattgtgataaagcaagaaaaggt 4049524  T
Q  562 atgaac 567  Q
    ||||||    
T  4049523 atgaac 4049518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 39866737 - 39866779
Alignment:
Q  359 catgtccataagttgttttgagtttattttcataagctcttca 401  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  39866737 catgtccataagctgttttcagtttattttcataagctcttca 39866779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 9700138 - 9700029
Alignment:
Q  291 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaac-agatat-acatgtccataagttgttttgagtttatttt 388  Q
    |||| |||||||||||||| | ||| |||||||||||||| ||||||| |||| || || | |  ||| ||||||||||||| |||||| |  |||||||    
T  9700138 tatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttatttt 9700039  T
Q  389 cataagctct 398  Q
    ||||||||||    
T  9700038 cataagctct 9700029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 11569379 - 11569491
Alignment:
Q  280 tttgattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag-atat-acatgtccataagttgtttt 377  Q
    |||||||||| |||  |||||||||| ||  | ||| |||||||||||||  || |||| ||||||||||||||  ||| |||||| |||||||||||||    
T  11569379 tttgattggcttatcagagcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgtttt 11569478  T
Q  378 gagtttattttca 390  Q
     || |||||||||    
T  11569479 cagcttattttca 11569491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 36172477 - 36172434
Alignment:
Q  468 ctttacagttaaatagaaggtctatacttggattacctttagaa 511  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||    
T  36172477 ctttatagttaaatagaaggtctaaacttggattgcctttagaa 36172434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 24326163 - 24326106
Alignment:
Q  296 gagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 353  Q
    |||||||||||||  | |||||||||||||||||  ||| ||| ||||||||||||||    
T  24326163 gagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaacag 24326106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 398
Target Start/End: Complemental strand, 26410395 - 26410307
Alignment:
Q  313 taagcacttgtgagactacttgagagtgcttatggaaacagat-at-acatgtccataagttgttttgag-tttattttcataagctct 398  Q
    ||||||||| ||||||| |||| ||| |||||||||||||| | || ||||||||| ||| |||||| || ||||||| ||||||||||    
T  26410395 taagcacttctgagactgcttgggagagcttatggaaacagctcatgacatgtccagaagctgtttttagctttatttccataagctct 26410307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 9027646 - 9027604
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctcttc 400  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  9027646 acatgtccataagttgttttcagcttattttcataagctcttc 9027604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 27909640 - 27909680
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  27909640 acatgtccataagttgttttcagcttatttccataagctct 27909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 33534102 - 33534211
Alignment:
Q  291 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacagatat--acatgtccataagttgttttgagtttatttt 388  Q
    |||| ||||||||||| |  | |||| |||||||||| || ||||||| ||||||| ||||| ||    |||| ||||||||||||||| || |||||||    
T  33534102 tatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagcttatttt 33534201  T
Q  389 cataagctct 398  Q
    ||||||||||    
T  33534202 cataagctct 33534211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 8469015 - 8468976
Alignment:
Q  359 catgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  8469015 catgtccataagttgttttcagattattttcataagctct 8468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 1137780 - 1137740
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  1137780 acatgttcataagttgttttcagtttatttccataagctct 1137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 22667548 - 22667478
Alignment:
Q  283 gattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 353  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||  ||||||| | ||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacag 22667478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 22724187 - 22724117
Alignment:
Q  283 gattggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 353  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||  ||||||| | ||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacag 22724117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 21862177 - 21862217
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  21862177 acatgtccataagttgttttcagcttatttccataagctct 21862217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 24785322 - 24785290
Alignment:
Q  365 cataagttgttttgagtttattttcataagctc 397  Q
    ||||||||||||| |||||||||||||||||||    
T  24785322 cataagttgtttttagtttattttcataagctc 24785290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 37825190 - 37825150
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  37825190 acatgtccataagttgttttcaggttatttccataagctct 37825150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 4966222 - 4966181
Alignment:
Q  360 atgtccataagttgttttgagtttattttcataagctcttca 401  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  4966222 atgtccataagttgttttcagtttatttccataagctcttca 4966181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 33894742 - 33894666
Alignment:
Q  313 taagcacttgtgagactacttgagagtgcttatggaaacag-atat-acatgtccataagttgttttgagtttattt 387  Q
    |||||||||||||||||  ||| ||| ||||||| |||||| |||| |||||||||||||||||||| || ||||||    
T  33894742 taagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttattt 33894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 8094443 - 8094396
Alignment:
Q  291 tattcgagcttatctactatcgtaagcacttgtgagactacttgagag 338  Q
    |||| |||||||||||||| | |||||||||||||||||| |||||||    
T  8094443 tatttgagcttatctactagcataagcacttgtgagactatttgagag 8094396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 30496843 - 30496780
Alignment:
Q  290 ctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag 353  Q
    ||||| ||| |||||||||| | ||||| |||| ||||||||||||||| ||||||| ||||||    
T  30496843 ctatttgagtttatctactagcataagcccttgcgagactacttgagagagcttatgaaaacag 30496780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 27378837 - 27378870
Alignment:
Q  365 cataagttgttttgagtttattttcataagctct 398  Q
    ||||||||||||| ||||||||||||||||||||    
T  27378837 cataagttgttttcagtttattttcataagctct 27378870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 37064230 - 37064262
Alignment:
Q  366 ataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||| ||||||||||||||||||||    
T  37064230 ataagttgttttaagtttattttcataagctct 37064262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 45901221 - 45901181
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  45901221 acatgtccataagcttttttcagtttattttcataagctct 45901181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 46082104 - 46082064
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||| |||||||||||||| || |||||||||||||||||    
T  46082104 acatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 10199341 - 10199450
Alignment:
Q  291 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacagat-at-acatgtccataagttgttttgagtttatttt 388  Q
    |||| |||||||||||||| | ||||||||||||| |||| ||| |||  || ||| ||| || | || |||||| ||||||||||||| || |||||||    
T  10199341 tatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttatttt 10199440  T
Q  389 cataagctct 398  Q
    ||||||||||    
T  10199441 cataagctct 10199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Complemental strand, 6279514 - 6279427
Alignment:
Q  313 taagcacttgtgagactacttgagagtgcttatggaaacagatat--acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||| | ||  ||||||| |||||||||||||| ||   |||||||||||||||||||| ||  ||||| ||||||||||    
T  6279514 taagcacttgtgtggctgtttgagagagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctct 6279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 32515374 - 32515462
Alignment:
Q  291 tattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacag-atat-acatgtccataagttgtttt 377  Q
    |||| ||| |||||||||| | |||||||||||||||||  ||| ||| ||||||||||||||  ||| ||||||| ||||||||||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgtttt 32515462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 28689454 - 28689492
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagct 396  Q
    |||||||||||||||||||| || |||||||||||||||    
T  28689454 acatgtccataagttgttttcagcttattttcataagct 28689492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 38170649 - 38170735
Alignment:
Q  317 cacttgtgagactacttgagagtgcttatggaaacagat-at-acatgtccataagttgttttgagtttattttcataagctcttca 401  Q
    ||||||||||||| |||| ||| ||||||| |||||| | || |||||| ||||||||||||| || || ||||| |||||||||||    
T  38170649 cacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagctcttca 38170735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 11639418 - 11639458
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||||||||| |||||| || |||||||||||||||||    
T  11639418 acatgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 27140546 - 27140506
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  27140546 acatgtccataagttgttttcagcttatttgcataagctct 27140506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 46252684 - 46252724
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||| ||||||||||||| || |||||||||||||||||    
T  46252684 acatgttcataagttgttttcaggttattttcataagctct 46252724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 38078365 - 38078452
Alignment:
Q  313 taagcacttgtgagactacttgagagtgcttatggaaacagatata--catgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||| |||||||||  |||||| ||||||||||| || || |  ||||| |||||||||||||||| | |||| ||||||||||    
T  38078365 taagcactggtgagactatctgagagagcttatggaaatagttaaaggcatgttcataagttgttttgagctcatttacataagctct 38078452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 1160673 - 1160716
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctcttca 401  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||    
T  1160673 acatgtccataagttgtttttagtttatttccataagctgttca 1160716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 11063556 - 11063518
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagct 396  Q
    |||||||||||||||||||| || |||||||||||||||    
T  11063556 acatgtccataagttgtttttagcttattttcataagct 11063518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 35329756 - 35329860
Alignment:
Q  296 gagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaacagata--tacatgtccataagttgttttgagtttattttcataa 393  Q
    |||||||||||||| | ||| |||| |||||| |||||| |||  ||||||||||||| ||   ||||| || ||||||||||  || |||||| |||||    
T  35329756 gagcttatctactaccataaacactagtgagattacttgtgagatcttatggaaacagttaatgacatgcccctaagttgtttccagcttatttccataa 35329855  T
Q  394 gctct 398  Q
    |||||    
T  35329856 gctct 35329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 1160742 - 1160782
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  1160742 acatgtctataagttgttttcagtttatttccataagctct 1160782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 25609940 - 25609872
Alignment:
Q  284 attggcctattcgagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaaca 352  Q
    |||||| |||| |||||||||||||| | |||| |||||||||||| ||||  |  |||||||||||||    
T  25609940 attggcttatttgagcttatctactaacataagaacttgtgagactgcttggaatagcttatggaaaca 25609872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 8177536 - 8177574
Alignment:
Q  360 atgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||| || |||||||||||||||||    
T  8177536 atgtccataagttgttttcaggttattttcataagctct 8177574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 10638537 - 10638577
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    |||||||||||||||||||| | || |||||||||||||||    
T  10638537 acatgtccataagttgttttcaattcattttcataagctct 10638577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 17259349 - 17259293
Alignment:
Q  296 gagcttatctactatcgtaagcacttgtgagactacttgagagtgcttatggaaaca 352  Q
    |||||||||||||| | |||||||||||||||||  ||||| | |||| ||||||||    
T  17259349 gagcttatctactaacataagcacttgtgagacttgttgagtgagcttttggaaaca 17259293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 6496 - 6536
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  6496 acatgtctataagttgttttcagtttatttccataagctct 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 13516 - 13556
Alignment:
Q  358 acatgtccataagttgttttgagtttattttcataagctct 398  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  13516 acatgtctataagttgttttcagtttatttccataagctct 13556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University