View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_15 (Length: 545)
Name: NF20816_low_15
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 2062323 - 2062840
Alignment:
| Q |
18 |
ttgacaatcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
2062323 |
ttgacaatcatatattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcatcaggtggaaatcctggaccagctg |
2062422 |
T |
|
| Q |
118 |
gtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2062423 |
gtgcaggagctgttctgtatgcggaagatgggagactggtatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatata |
2062522 |
T |
|
| Q |
218 |
gtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaatttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
2062523 |
gtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaaaaaatagttctgctgagtatcgcgctttaatttt |
2062622 |
T |
|
| Q |
318 |
gggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtt |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2062623 |
gggtctaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtt |
2062722 |
T |
|
| Q |
418 |
tctacattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2062723 |
tctacattaacaagaaaatgaaatttacaattttcttataacatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacccgaatttat |
2062822 |
T |
|
| Q |
518 |
cgagcttgtgtgatgatg |
535 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2062823 |
tgagcttgtgtgatgatg |
2062840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 2057897 - 2058410
Alignment:
| Q |
18 |
ttgacaatcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctg |
117 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
2057897 |
ttgacaatcataggttaacttcaaagtgctatatcttatttgcagggtttgtgtatcgttcggtttggtggtgtatcgagtggaaatcctggaccagctg |
2057996 |
T |
|
| Q |
118 |
gtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatata |
217 |
Q |
| |
|
| ||||||| |||| ||| ||||||||||||| | || ||||| | |||||| | ||||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
2057997 |
gggcaggagttgttatgtttgcggaagatgggcggaaggtatcaactatatgcaacaattcaattggtttttattttatattggtgatttataaaatata |
2058096 |
T |
|
| Q |
218 |
gtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaatttt |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| || ||| ||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
2058097 |
gtagctgactgttatgtttcttttcttcacagctctatcgattccgtgaaggactgggcgatcagacagatagttctgctgagtatcgcgctttaatttt |
2058196 |
T |
|
| Q |
318 |
gggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2058197 |
gggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttgtgttctat----tatggtt |
2058292 |
T |
|
| Q |
418 |
tctacattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttat |
517 |
Q |
| |
|
| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2058293 |
tttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaaaatcatgaaccctaatttat |
2058392 |
T |
|
| Q |
518 |
cgagcttgtgtgatgatg |
535 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2058393 |
tgagcttgtgtgatgatg |
2058410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 2053798 - 2054179
Alignment:
| Q |
30 |
tattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctggtgcaggagctg |
129 |
Q |
| |
|
||||||||| |||||| |||| |||||||| || ||| |||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
2053798 |
tattaactctaaagttttataccttatttgtagcgttcttgtatcctcgagtttgatggtgcatcgattggaaatcctggaccagctggtgcaggagcta |
2053897 |
T |
|
| Q |
130 |
ttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatatagtagttgactgt |
229 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| || || ||||| ||||| | |||||| | |||||||||||||||| |||| |||| | |
|
|
| T |
2053898 |
ttctgtatgcggaagatgggagaccggtatcaaatttattcaacagttcaattggttttaattttatatttttgatttataaaatattgtagctgaccga |
2053997 |
T |
|
| Q |
230 |
tatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagca |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| || | ||||||||||| ||||||||| || ||||| || |||||||| || || |
|
|
| T |
2053998 |
tatgtttcttttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgctgagtaccgcgctttgatattgggactgaaaca |
2054097 |
T |
|
| Q |
330 |
agcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatat |
411 |
Q |
| |
|
||| ||| ||||| |||||| |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
2054098 |
agctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcaggtttgtgttctattatat |
2054179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 2047232 - 2047606
Alignment:
| Q |
18 |
ttgacaatcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctg |
117 |
Q |
| |
|
||||||||||||| |||||| ||| | |||| ||||||||||| |||| |||| | || |||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
2047232 |
ttgacaatcatgt--taactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatccgggaccagctg |
2047329 |
T |
|
| Q |
118 |
gtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatata |
217 |
Q |
| |
|
||||||||||||| || |||| |||||| || | |||| || |||||| |||| | ||||| | | ||| || |||||||||||||||||| |
|
|
| T |
2047330 |
gtgcaggagctgtactatatgatgaagattggtgtctggtattaaatttttgcaacaattcaattgggtatta-----tattgttgatttataaaatatt |
2047424 |
T |
|
| Q |
218 |
gtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaatttt |
317 |
Q |
| |
|
|||| ||| | ||||||||||||| ||||||| |||||| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2047425 |
gtagccaactcctgtgtttcttttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacgctgctgagtatcgtgctttaatttt |
2047524 |
T |
|
| Q |
318 |
gggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgt |
399 |
Q |
| |
|
|||||| || ||||||||||||||| ||| ||||||||||| |||||| ||||||||| | | |||| |||| ||||||||| |
|
|
| T |
2047525 |
gggacttaatcaagcaatctataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatcaggtttgt |
2047606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 2054339 - 2054414
Alignment:
| Q |
433 |
aaatgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacc |
508 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
2054339 |
aaatgaaatttacaattttcttatcatatgttattggttttgcaacagtttctgggttcatggaaaatcaacaacc |
2054414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 2041716 - 2041812
Alignment:
| Q |
32 |
ttaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctggtgcaggagct |
128 |
Q |
| |
|
||||||||||| || || ||||||||||||| ||| |||||| ||| ||||||||||| | |||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
2041716 |
ttaactccaaaattttaaatcttatttgcagagttcttgtatccttcaatttgatggtgcgtcaagtggaaatcctggatcagctggtgcaagagct |
2041812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 399
Target Start/End: Original strand, 2041919 - 2042089
Alignment:
| Q |
229 |
ttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagc |
328 |
Q |
| |
|
||||||||||||||||| |||| | || ||| || |||||||| || | ||||||||||| |||||||||||| ||||| || || ||| | || |
|
|
| T |
2041919 |
ttatgtttcttttcttcatagctatatcaattccgagaaggactgggctatcaaacaaataatgttgctgagtatcgcgctttgatcttaggattgaatt |
2042018 |
T |
|
| Q |
329 |
aagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgt |
399 |
Q |
| |
|
|||||||| | | | ||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
2042019 |
aagcaatccagagaggatatagaaacatcaatgtgcaaggagactcagaacttgttatcaatcaggtttgt |
2042089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 509
Target Start/End: Original strand, 2048106 - 2048172
Alignment:
| Q |
443 |
tacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccc |
509 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
2048106 |
tacattttttgtatcacttgttattggttttgcaacagtttctgggtatatggaaaatcaacaaccc |
2048172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 2088190 - 2088238
Alignment:
| Q |
80 |
gtttgatggtgcattaagtggaaatccaggaccagctggtgcaggagct |
128 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
2088190 |
gtttgatggcgcatcgcgtggaaatcccggaccagctggtgcaggagct |
2088238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 2088570 - 2088606
Alignment:
| Q |
458 |
atatgttattggttttgcaacagtttttgggttcatg |
494 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2088570 |
atatgttattggttttgcaacagtttaagggttcatg |
2088606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 39183084 - 39183031
Alignment:
| Q |
463 |
ttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaattta |
516 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||| |||||| |||||| |
|
|
| T |
39183084 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaattta |
39183031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University