View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_17 (Length: 530)
Name: NF20816_low_17
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_17 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 242 - 520
Target Start/End: Complemental strand, 13642519 - 13642243
Alignment:
| Q |
242 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattcaattttttcagaaattgaacaagaagagtattaat |
341 |
Q |
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| T |
13642519 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattctattttttcagaaattgaacaaga---gtattaat |
13642423 |
T |
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| Q |
342 |
cgacccaaaggtaagttaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattctatattgtaaattttcaattctatta |
441 |
Q |
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| T |
13642422 |
cgacccaaaggtaaattaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattttatattgtaaattttcaattctatta |
13642323 |
T |
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| Q |
442 |
aacatcac-taaccatttagcaacaaataatttcaattcaagtgtgaattttatttgacaatggttcttattgacctatg |
520 |
Q |
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| T |
13642322 |
aacatcacttaaccatttagcaacaaataatttcaattgaagtgtgaattttatttgacaatggttgttattgacctatg |
13642243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 13642807 - 13642606
Alignment:
| Q |
18 |
ataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatgatcgtcttaattga |
117 |
Q |
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| T |
13642807 |
ataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatgatcgtcttaattga |
13642708 |
T |
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| Q |
118 |
gacaatttgggtagcggtgcaaaaactgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaattggattatattcaa |
217 |
Q |
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| T |
13642707 |
gacaatttgggtagcaatgcaaaaattgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaattggattatattcaa |
13642608 |
T |
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| Q |
218 |
tt |
219 |
Q |
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| T |
13642607 |
tt |
13642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 254 - 432
Target Start/End: Original strand, 55667 - 55846
Alignment:
| Q |
254 |
tttcacatcgaaataggctccatcttcatacccaa-tctagaatattatgattcaattttttcagaaattgaacaagaagagtattaatcgacccaaagg |
352 |
Q |
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| T |
55667 |
tttcacatcttaataggctccatctccatccccaaatctagaatattattattca-ttttttcacaaatggaataagaagaaaatcaatcaacccaaagc |
55765 |
T |
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| Q |
353 |
taagttaacatgactaaatatcacatgaaaatcaaccattgaaaattt-agggttctgttattctatattgtaaattttca |
432 |
Q |
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| T |
55766 |
taaattgtcatgaccaaattccacatgaaaatcaacgattgaaaatttgggggttctgttattttatattgtaaattttca |
55846 |
T |
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