View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_18 (Length: 508)
Name: NF20816_low_18
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 1021101 - 1021596
Alignment:
| Q |
1 |
aaacctaaccaacctagatatcatagcacttcagattaactaacacttgcactt-gtttttcaagttctt-gtttcccttcaaaaccttcttcaacattt |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1021101 |
aaacctaaccaacctagata-----gcacttcagattaac----acttgcactttgtttttcaagttctttgtttcccttcaaaaccttcttcaacattt |
1021191 |
T |
|
| Q |
99 |
gtttttgtttaatatacgcatacacacgttcaaata-----------tacggtatatatataccacctgaaacaatgggttgtacggtgtctaaactcga |
187 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
1021192 |
gtttttgtttaatatacgcatacagacgttcaaatacgtgtataatatacggtatatatataccacctgaaacaatgggttgcactgtgtctaaactcga |
1021291 |
T |
|
| Q |
188 |
caacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021292 |
caacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgt |
1021391 |
T |
|
| Q |
288 |
aactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaacacagtta |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021392 |
aactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctctccgtctccgacgacattcccgctgttttcatcaacacagtta |
1021491 |
T |
|
| Q |
388 |
aaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaa |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021492 |
aaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaa |
1021591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 4970737 - 4970857
Alignment:
| Q |
272 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
371 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttccgcactctccaccttcgctgccagtgaacctctcgccgtcttcgacgacattcccgccgtt |
4970836 |
T |
|
| Q |
372 |
ttcatcaacacagttaaaact |
392 |
Q |
| |
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||| |||||||||| |||||| |
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|
| T |
4970837 |
ttcgtcaacacagtaaaaact |
4970857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 272 - 392
Target Start/End: Complemental strand, 6345091 - 6344971
Alignment:
| Q |
272 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccaccttcgccgccagtgaacctctcgtcgtctccgacgacattcccgccgtt |
6344992 |
T |
|
| Q |
372 |
ttcatcaacacagttaaaact |
392 |
Q |
| |
|
||| |||||||||| |||||| |
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|
| T |
6344991 |
ttcgtcaacacagtaaaaact |
6344971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 189 - 380
Target Start/End: Complemental strand, 31344725 - 31344534
Alignment:
| Q |
189 |
aacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgta |
288 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||| ||||| | || ||||| || ||||||| || ||||| || || ||||| |
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| T |
31344725 |
aacgaagatacagtgcgacggtgcaaagaccgtcgccgtcttatgaaagaagctgtctatgctcgtcatcacctcgccgctgctcactccgactactgcc |
31344626 |
T |
|
| Q |
289 |
actctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaac |
380 |
Q |
| |
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|| || || |||||||| |||| ||||||||||||||| |||||||||||||| |||| || || ||| |||||| |||||||||||| |
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|
| T |
31344625 |
gttccctccgtctcaccggcaccgccctctccactttcgcctccggtgaacctctctccgtttctgataacactcccgccgttttcatcaac |
31344534 |
T |
|
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