View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_19 (Length: 505)
Name: NF20816_low_19
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 19643662 - 19643556
Alignment:
| Q |
200 |
tgaaaagtaaaaattgcttgtaaacatgaggtgagtagtgtttaaaggcatgaatcaccaccaaccaaagttaaccatttgtcatacttttcaacattct |
299 |
Q |
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| T |
19643662 |
tgaaaagtaaaaattgcttgtcaacatgaggtgagtagtgtttaaaggcatgaatc---accaaccaaagttaaccatttgtcatacttttcaacattat |
19643566 |
T |
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| Q |
300 |
cttttattat |
309 |
Q |
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|||||||||| |
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| T |
19643565 |
cttttattat |
19643556 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 19643868 - 19643777
Alignment:
| Q |
1 |
acgacgaaaccatgatatcgactttaggacgcatgttagtgtgactatcaaaattaaactcttgtaaaatatgtagtaggtgatactaattc |
92 |
Q |
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| T |
19643868 |
acgacgaaaccatgataccgactttaggacatatgttagcatgactatcaaaattaaactcttgtaaaatatgtagtaggtgatactaattc |
19643777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 19643529 - 19643474
Alignment:
| Q |
355 |
ttttgtaacaactttttctcttactcaaattgtccttaactttctctcttactcac |
410 |
Q |
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| T |
19643529 |
ttttgtaacaactttttctcttaatcacattgtccttaactttctctcttactcac |
19643474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 19643791 - 19643701
Alignment:
| Q |
112 |
aggtgatactaattcttgaaaaatacttcctccatcacatttataaataaatattcnnnnnnnaaattcaataaataattgatatatttgaa |
203 |
Q |
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| T |
19643791 |
aggtgatactaattcttgaaaaatacttcctagatcacatttataaacaaatattctttttttaaattcaa-aaataattgataaatttgaa |
19643701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 19643492 - 19643447
Alignment:
| Q |
364 |
aactttttctcttactcaaattgtccttaactttctctcttactca |
409 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
19643492 |
aactttctctcttactcacattgtccttaactttctctcttactca |
19643447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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