View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_21 (Length: 499)
Name: NF20816_low_21
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 134 - 478
Target Start/End: Complemental strand, 23408817 - 23408473
Alignment:
| Q |
134 |
gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
233 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23408817 |
gaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatcaatg |
23408718 |
T |
|
| Q |
234 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
23408717 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagacttgt |
23408618 |
T |
|
| Q |
334 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggtttct |
433 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23408617 |
tcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggtttct |
23408518 |
T |
|
| Q |
434 |
tagtgttttaattttctgagttgtaatgaactaatgggatctgtt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408517 |
tagtgttttaattttctgagttgtaatgaactaatgggatctgtt |
23408473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 131 - 408
Target Start/End: Complemental strand, 23415989 - 23415712
Alignment:
| Q |
131 |
gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23415989 |
gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca |
23415890 |
T |
|
| Q |
231 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415889 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
23415790 |
T |
|
| Q |
331 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23415789 |
tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac |
23415712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 134 - 407
Target Start/End: Complemental strand, 23453649 - 23453376
Alignment:
| Q |
134 |
gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
233 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23453649 |
gaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23453550 |
T |
|
| Q |
234 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23453549 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtcttgt |
23453450 |
T |
|
| Q |
334 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
23453449 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga |
23453376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 129 - 407
Target Start/End: Original strand, 26832731 - 26833009
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832731 |
gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
26832830 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
26832831 |
caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
26832930 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26832931 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26833009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 131 - 407
Target Start/End: Original strand, 23885825 - 23886101
Alignment:
| Q |
131 |
gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23885825 |
gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca |
23885924 |
T |
|
| Q |
231 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23885925 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggct |
23886024 |
T |
|
| Q |
331 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23886025 |
tgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga |
23886101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 129 - 407
Target Start/End: Original strand, 26434020 - 26434298
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434020 |
gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
26434119 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
26434120 |
caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
26434219 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26434220 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 131 - 407
Target Start/End: Original strand, 24307221 - 24307497
Alignment:
| Q |
131 |
gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca |
230 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
24307221 |
gttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
24307320 |
T |
|
| Q |
231 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
330 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24307321 |
atgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact |
24307420 |
T |
|
| Q |
331 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
24307421 |
tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga |
24307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 134 - 407
Target Start/End: Original strand, 23402075 - 23402348
Alignment:
| Q |
134 |
gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
233 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23402075 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23402174 |
T |
|
| Q |
234 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23402175 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt |
23402274 |
T |
|
| Q |
334 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23402275 |
tcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga |
23402348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 131 - 407
Target Start/End: Original strand, 23868730 - 23869006
Alignment:
| Q |
131 |
gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
23868730 |
gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
23868829 |
T |
|
| Q |
231 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23868830 |
atgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact |
23868929 |
T |
|
| Q |
331 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || ||||||| |
|
|
| T |
23868930 |
tgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
23869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 129 - 407
Target Start/End: Original strand, 26435800 - 26436078
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435800 |
gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
26435899 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
26435900 |
caatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
26435999 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26436000 |
cttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga |
26436078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 129 - 407
Target Start/End: Complemental strand, 34662323 - 34662045
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34662323 |
gcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcat |
34662224 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||||||| || || |
|
|
| T |
34662223 |
caatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttagg |
34662124 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
34662123 |
cttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga |
34662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
223 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
322 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
323 |
gtcagacttgttcttcctggtgaattggccaag |
355 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 23401946 - 23402031
Alignment:
| Q |
5 |
gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401946 |
gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc |
23402031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26832604 - 26832701
Alignment:
| Q |
2 |
gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26832604 |
gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg |
26832701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 24307091 - 24307186
Alignment:
| Q |
1 |
cgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24307091 |
cgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttccgctgc |
24307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23416112 - 23416018
Alignment:
| Q |
5 |
gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23416112 |
gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggttcagctgccgg |
23416018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 23408946 - 23408861
Alignment:
| Q |
5 |
gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408946 |
gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggttc |
23408861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26433893 - 26433990
Alignment:
| Q |
2 |
gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26433893 |
gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg |
26433990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26435673 - 26435770
Alignment:
| Q |
2 |
gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26435673 |
gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg |
26435770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23868600 - 23868698
Alignment:
| Q |
1 |
cgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23868600 |
cgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg |
23868698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 23885699 - 23885793
Alignment:
| Q |
5 |
gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23885699 |
gaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg |
23885793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 34662450 - 34662359
Alignment:
| Q |
2 |
gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc |
93 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
34662450 |
gcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggttcagc |
34662359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 23453778 - 23453696
Alignment:
| Q |
5 |
gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg |
87 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
23453778 |
gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg |
23453696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 129 - 384
Target Start/End: Original strand, 41670396 - 41670651
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || || || ||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
|
|
| T |
41670396 |
gcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat |
41670495 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || |||||||| || | |
|
|
| T |
41670496 |
caatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt |
41670595 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
384 |
Q |
| |
|
|||||||| || |||||| | || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
41670596 |
cttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 129 - 404
Target Start/End: Original strand, 40795765 - 40796040
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| || || || ||||| || || ||||| ||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
40795765 |
gcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcat |
40795864 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||| || | |
|
|
| T |
40795865 |
caatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgt |
40795964 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt |
404 |
Q |
| |
|
|| |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| ||||||||||||| |
|
|
| T |
40795965 |
ctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt |
40796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 282 - 396
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
| Q |
282 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
382 |
tgtgactaagtttac |
396 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttac |
33216708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 129 - 384
Target Start/End: Original strand, 29391462 - 29391717
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||| ||||| || |||||| ||||| || |||||||||||||| |
|
|
| T |
29391462 |
gcgttgaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcat |
29391561 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | |
|
|
| T |
29391562 |
caatgatatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgt |
29391661 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
384 |
Q |
| |
|
| |||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
29391662 |
ttggttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 407
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
407 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || ||||||||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga |
45576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
226 |
catcaatgatatcttcgagaagcttgctcaagaatca |
262 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 129 - 384
Target Start/End: Complemental strand, 40180552 - 40180297
Alignment:
| Q |
129 |
gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat |
228 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||| ||| | |||||||| || ||||| ||||||||||||||||| |
|
|
| T |
40180552 |
gcgttgaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcat |
40180453 |
T |
|
| Q |
229 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
328 |
Q |
| |
|
|| |||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| |
|
|
| T |
40180452 |
taacgatatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttaga |
40180353 |
T |
|
| Q |
329 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
384 |
Q |
| |
|
| ||||||||||| |||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
40180352 |
ttggttcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 405
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
282 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
382 |
tgtgactaagtttacaagctctta |
405 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
226 |
catcaatgatatcttcgagaagcttgctcaagaatca |
262 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
317 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
369 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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