View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_22 (Length: 482)
Name: NF20816_low_22
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 103 - 441
Target Start/End: Original strand, 8142221 - 8142560
Alignment:
| Q |
103 |
tccgctatttgtcatattggattttt-ggcaatccaatattttccacgatccgatattaatcgataggaattacatatcaagaatagatgaagtacaatc |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8142221 |
tccgctatttgtcatattggattttttggcaatccaatattttccacgatccgatattaatagataggaattacatatcaagaatagatgaagtacaatc |
8142320 |
T |
|
| Q |
202 |
ttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8142321 |
ttcaagccatacatagtcactgtgagttaaggtat---gattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact |
8142417 |
T |
|
| Q |
302 |
ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgttacttgaatctataggcatatg---tcc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
8142418 |
ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtaacttgaatctataggcatatgtaatac |
8142517 |
T |
|
| Q |
399 |
aaattgcatcnnnnnnnggtgaagatacttggcatttggtata |
441 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8142518 |
aaattgcatctttttttggtgaagatacttgacatttggtata |
8142560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 170 - 447
Target Start/End: Complemental strand, 7501177 - 7500900
Alignment:
| Q |
170 |
aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttattt |
269 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || | |||||||||| |||||||||||||||| |
|
|
| T |
7501177 |
aattacatgtcaagaatacatgaagtacattcttcaagccatacatagtcattgtgagttaaggcat---gcttggctaagatatgtgcctcatttattt |
7501081 |
T |
|
| Q |
270 |
atattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaat |
369 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||| | ||||||| | ||||||||||||||||||| ||||| ||| ||||| ||||||| ||||| |
|
|
| T |
7501080 |
gtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatggcaaat |
7500981 |
T |
|
| Q |
370 |
ctgttacttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtatatggata |
447 |
Q |
| |
|
|||| |||||||| ||||||| |||| ||||||||||||| |||||||||||||| | |||| |||| ||||| |
|
|
| T |
7500980 |
ctgtaacttgaatttataggcttatgtcatccaaattgcatctttttttggtgaagatacttgtcgtttgatataaggata |
7500900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 263 - 447
Target Start/End: Complemental strand, 7498299 - 7498112
Alignment:
| Q |
263 |
tttatttatattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7498299 |
tttatttatattcattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctat |
7498200 |
T |
|
| Q |
363 |
gacaaatctgttacttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtatatggata |
447 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
7498199 |
gacaaatctgtaactttaatctataggtatatgtaattcaaattgcatctttttttggtcaagatacttggcatttggtataaggata |
7498112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8142096 - 8142208
Alignment:
| Q |
1 |
ttttatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8142096 |
ttttatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttcgcatgctttattttatacataattatttatttgaacagttttgcag |
8142195 |
T |
|
| Q |
101 |
tttccgctatttg |
113 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
8142196 |
tttccgctctttg |
8142208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 4931749 - 4931654
Alignment:
| Q |
16 |
ttttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctattt |
112 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||| | |||||||||||||||| |||||||||||||| ||||| | ||||| |||| |||||| |
|
|
| T |
4931749 |
ttttaaatttctggttatgtagtttttatttgtgtgcaa-catgctttattttatatataattatttatttcaacaggtgtgcagcttccactattt |
4931654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 7498560 - 7498499
Alignment:
| Q |
170 |
aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaagg |
233 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
7498560 |
aattacatatcaagaataaatgtagtat--tcttcatgccatacatagtcactttgagttaagg |
7498499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 9130909 - 9131066
Alignment:
| Q |
4 |
tatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagttt |
103 |
Q |
| |
|
||||| || ||||||| ||||||||||| || ||| ||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||| | || |
|
|
| T |
9130909 |
tatatcaattcatttttaatttctgtttggttagcttttatttgtttgt-agcatgctttattttatatataattatttatttgaaccgttttgtggctt |
9131007 |
T |
|
| Q |
104 |
ccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat |
162 |
Q |
| |
|
|||||| | |||||| | ||||||||| ||| ||||||||| |||| |||||||||| |
|
|
| T |
9131008 |
acgctatgtatcatatcgaatttttggcgatctgatattttccgcgatacgatattaat |
9131066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 22209859 - 22209802
Alignment:
| Q |
103 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatatta |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
22209859 |
tccgctatttgtcatatcggatttttggcgatccaatattttccgtgatcagatatta |
22209802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 1530418 - 1530466
Alignment:
| Q |
104 |
ccgctatttgtcatattggatttttggcaatccaatattttccacgatc |
152 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
1530418 |
ccgctatttgttatattggatttttggcgatccgatactttccacgatc |
1530466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 1492294 - 1492344
Alignment:
| Q |
103 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatcc |
153 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||| ||||||||| |||||| |
|
|
| T |
1492294 |
tccgctatttgttatatcggatttttggcgatcctatattttccgcgatcc |
1492344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 54256646 - 54256587
Alignment:
| Q |
103 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat |
162 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
54256646 |
tccgctatttctcatagcagatttttggcgatccgatattttccacgatccgctattaat |
54256587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 41514478 - 41514446
Alignment:
| Q |
54 |
agcatgctttattttatacataattatttattt |
86 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
41514478 |
agcatgctttattttatatataattatttattt |
41514446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University