View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_27 (Length: 461)

Name: NF20816_low_27
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_27
NF20816_low_27
[»] chr2 (12 HSPs)
chr2 (300-452)||(2474238-2474390)
chr2 (18-195)||(2474509-2474686)
chr2 (300-447)||(2469972-2470119)
chr2 (338-452)||(2458018-2458132)
chr2 (333-452)||(3063281-3063403)
chr2 (322-452)||(2462594-2462727)
chr2 (345-452)||(2466642-2466752)
chr2 (353-422)||(2471021-2471090)
chr2 (255-303)||(2474456-2474504)
chr2 (362-452)||(2486512-2486602)
chr2 (362-421)||(2478858-2478917)
chr2 (362-421)||(2483362-2483421)
[»] chr4 (1 HSPs)
chr4 (333-452)||(18015917-18016039)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 300 - 452
Target Start/End: Complemental strand, 2474390 - 2474238
Alignment:
Q  300 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 399  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  2474390 aatacaaacaaatatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacattt 2474291  T
Q  400 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474290 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 2474238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2474686 - 2474509
Alignment:
Q  18 aagttaaatattaaaattctcagtcgtataactaagggcgttcagctgttgcactgaacaacactgctgagtgtatttannnnnnnnnnnnacaaaaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||            |||||||||    
T  2474686 aagttaaatattaaaattctcagtcgtataactaagggcgttcagctgttgcaccgaacaacactgctgagtatatttattttttctatttacaaaaaca 2474587  T
Q  118 atttatattaataagaataccgacgtttcatactattttgtccgaaaaaatatttgtggatggtgtgagttagttaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474586 atttatattaataagaataccgacgtttcatactattttgtccgaaaaaatatttgtggatggtgtgagttagttaaa 2474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 447
Target Start/End: Complemental strand, 2470119 - 2469972
Alignment:
Q  300 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 399  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2470119 aatacaaataaatatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacattt 2470020  T
Q  400 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagt 447  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  2470019 cactttggcacatccaatccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 2458132 - 2458018
Alignment:
Q  338 ccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa 437  Q
    |||| ||||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  2458132 ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa 2458033  T
Q  438 ccacctgagtataat 452  Q
    | |||||||| ||||    
T  2458032 caacctgagtgtaat 2458018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 333 - 452
Target Start/End: Original strand, 3063281 - 3063403
Alignment:
Q  333 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 429  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  3063281 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 3063380  T
Q  430 tctccaaaccacctgagtataat 452  Q
    ||||||||| |||||||||||||    
T  3063381 tctccaaacaacctgagtataat 3063403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 322 - 452
Target Start/End: Complemental strand, 2462727 - 2462594
Alignment:
Q  322 ttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctc---cattatcacatttcactttggcacatccaata 418  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    |||||||||| |||||||||||||||||| |    
T  2462727 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 2462628  T
Q  419 cgttttgtgtttctccaaaccacctgagtataat 452  Q
    |||| || |||||||||||| ||||| |||||||    
T  2462627 cgttgtgagtttctccaaacaacctgggtataat 2462594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 2466752 - 2466642
Alignment:
Q  345 agttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtttctccaaaccac 441  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||||||||||| ||    
T  2466752 agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaac 2466653  T
Q  442 ctgagtataat 452  Q
    ||| |||||||    
T  2466652 ctgggtataat 2466642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 2471090 - 2471021
Alignment:
Q  353 ggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgtt 422  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaacacgtt 2471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 2474504 - 2474456
Alignment:
Q  255 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474504 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 2474456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 2486602 - 2486512
Alignment:
Q  362 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 452  Q
    |||||||||||||  ||||  || ||||||||||||||||||||| ||||||||| ||||  ||  |||  |||||| |||||||||||||    
T  2486602 taattgcaagtaacaaatgagccaccattatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat 2486512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 2478917 - 2478858
Alignment:
Q  362 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 421  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2478917 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 2483421 - 2483362
Alignment:
Q  362 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 421  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2483421 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2483362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 333 - 452
Target Start/End: Complemental strand, 18016039 - 18015917
Alignment:
Q  333 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 429  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  18016039 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 18015940  T
Q  430 tctccaaaccacctgagtataat 452  Q
    ||||||||| |||||||||||||    
T  18015939 tctccaaacaacctgagtataat 18015917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University