View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_31 (Length: 455)
Name: NF20816_low_31
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 19903004 - 19903223
Alignment:
| Q |
14 |
agatcggttgtgatttgagattgctcatcggagcctcattctctcatcttctcccttctaaggatgtgcgagaagaaacaagtcttcccctctttcttgt |
113 |
Q |
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| T |
19903004 |
agatcggtcgtgatttgagattgctcatccgagcctcattctctcatcttctcccttctaaggatgtgccagaagaaacaagtcttcccctctttcttgt |
19903103 |
T |
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| Q |
114 |
ccatcttcttctacaataaataagctttacgtgtctaataacttattgtaataagtattatcttaatgtaaatatattatgaaatattaatctactaaga |
213 |
Q |
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| T |
19903104 |
ccatcttcttctacaataaataagctttaggtgtctaataacttattgtaataagtattatcttaatgtaaatgtattatgaaatattaatctactaaga |
19903203 |
T |
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| Q |
214 |
aaatgtattgatgtctcttt |
233 |
Q |
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| T |
19903204 |
aaatgtattgatgtctcttt |
19903223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 231 - 433
Target Start/End: Original strand, 19903378 - 19903602
Alignment:
| Q |
231 |
ttttcagaattgagtataccacttgagaatggagtagggtagaaaaagaaattgtaaactatttgggtctataagg----------------------ga |
308 |
Q |
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| T |
19903378 |
ttttcagaattgagtataccacttgagaatggagttgggtagaaaaagaaattgcaaactctttaggtccataagggataagaaccaagctcataagaga |
19903477 |
T |
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| Q |
309 |
taagaaccaagcccattattaagtcttgtttcattttgcaaaaacagtccattccgaagnnnnnnnnaatttcttattttgtatgccttttatgttacta |
408 |
Q |
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| T |
19903478 |
taagaaccaagcccattattaagtcttgtttcattttgcaaaaacagtccattccgaagtttattttaatttcttattttgtatgccttttatgttacta |
19903577 |
T |
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| Q |
409 |
tcttttcgaaggcacttttgtcatt |
433 |
Q |
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| T |
19903578 |
tcttttcgaaggcagttttgtcatt |
19903602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 41835487 - 41835423
Alignment:
| Q |
137 |
gctttacgtgtctaataacttattgtaataagtattatcttaatgtaaatatattatgaaatatt |
201 |
Q |
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| T |
41835487 |
gctttaagtgtctaataacttgttgtaataagcattatgctaatgtaaatgtaagatgaaatatt |
41835423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 24601039 - 24601120
Alignment:
| Q |
138 |
ctttacgtgtctaataacttattgtaataagtattatcttaatgtaaatatattatgaaatattaatctactaagaaaatgt |
219 |
Q |
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| T |
24601039 |
ctttaggtgtctaataatttgatgtaataagcattattttaatataaatgtattatcaaatattgatcagctaataaaatgt |
24601120 |
T |
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