View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_32 (Length: 451)
Name: NF20816_low_32
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 64 - 434
Target Start/End: Complemental strand, 18464131 - 18463745
Alignment:
| Q |
64 |
aacagccaatattattaatagtaaccaaactcacaaggtggaagtttgtccgaaaaacacaaatagaaaatacaaacagccccatgaaaacaaaaggtct |
163 |
Q |
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| T |
18464131 |
aacagccaatattattaatagtaaccaaactcacaaggtggaagtttgtccgaaaaacacaaatagaaaatacaaacagccccatgaaaacaaaaggtct |
18464032 |
T |
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| Q |
164 |
gctaccaaaccaactccttggcaaactgcaccataacagaagaaaaaacagcagaaaaaccagaacagccctataggaaaccctaaaccctaaaatgtta |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18464031 |
gctaccaaaccaactccttggcaaactgcaccataacagaagaaaaaacagcagaaaaaccagaacagccctataggaaaccctaaaccctaaaatgtta |
18463932 |
T |
|
| Q |
264 |
a----------------tgttgttctaaatatagggctgaagagatttcgtttttaattgctaatacaggctaattaggtttaagcctatgtaacctata |
347 |
Q |
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| T |
18463931 |
atgttactttttttttatgttgttctaaatatagggctgaagagatttcgtttttaattgctaatacaggctaattaggtttaagcctatgtaacctata |
18463832 |
T |
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| Q |
348 |
tccctaacctatttgcaaaaccgtcaagtcaccgttagtgtaccaagattgatgactattgtgattacacagctatgcagtatcttc |
434 |
Q |
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| T |
18463831 |
tccctaacctatttgcaaaaccgtcaagtcatcgttagtgtaccaagattgatgactattgtgattacacagctatgcagtatcttc |
18463745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 15062741 - 15062803
Alignment:
| Q |
64 |
aacagccaatatt-attaatagtaaccaaactcacaaggtggaagtttgtccgaaaaacacaa |
125 |
Q |
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| T |
15062741 |
aacagccaatatttattattaggaaccaaactcacaaagtggaagtttgtcccaaaaacacaa |
15062803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 19723998 - 19724059
Alignment:
| Q |
64 |
aacagccaatattattaatagtaaccaaactcacaaggtggaagtttgtccgaaaaacacaa |
125 |
Q |
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| T |
19723998 |
aacagtcaatactattactagcaaccaaactcacaaggtggtagtttgtcagaaaaacacaa |
19724059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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