View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_33 (Length: 431)
Name: NF20816_low_33
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_33 |
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| [»] scaffold0252 (2 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 188 - 413
Target Start/End: Original strand, 21215 - 21440
Alignment:
| Q |
188 |
taagaaattcgagtcggcagggtatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaag |
287 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
21215 |
taagaaattcgagtaaacagggtatactctttccaaggcagtctatgatggtattcataggtctttgacaagtgctcggaaatttgatgaagctgaaaag |
21314 |
T |
|
| Q |
288 |
attgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaagacgggtaggtttgaagaagcac |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21315 |
attgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaaaacgggtaggtttgaagaagcac |
21414 |
T |
|
| Q |
388 |
ttaaggtaattgatgatatgcaagct |
413 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
21415 |
ttaaggtaattgatgatatgcaagct |
21440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 21050 - 21185
Alignment:
| Q |
56 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcatatcagccatcagttctggattgc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21050 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgatggatagttcatataagccatcagttctggattgc |
21149 |
T |
|
| Q |
156 |
attatgcttttacagagcatatctgcaagcgataag |
191 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||| |
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| T |
21150 |
attatgcttttaaagagcacatctgcaagcgataag |
21185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 188 - 413
Target Start/End: Original strand, 43435752 - 43435977
Alignment:
| Q |
188 |
taagaaattcgagtcggcagggtatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaag |
287 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43435752 |
taagaaattcgagtcatcagggtatactctttccaaggcagtctatgatggtattcataggtctttgacaagtgctgggaaatttgatgaagctgaaaag |
43435851 |
T |
|
| Q |
288 |
attgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaagacgggtaggtttgaagaagcac |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
43435852 |
attgtcgagaccatgaaaaatgatggctacgagccagatagcatcacctacagtcaacttattttcggactttgtaagacggggaggtttgaagaagcac |
43435951 |
T |
|
| Q |
388 |
ttaaggtaattgatgatatgcaagct |
413 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
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|
| T |
43435952 |
ttaaggtaatcgatgatatgaaagct |
43435977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 188 - 413
Target Start/End: Original strand, 43443946 - 43444171
Alignment:
| Q |
188 |
taagaaattcgagtcggcagggtatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaag |
287 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43443946 |
taagaaattcgagtcatcagggtatactctttccaaggcagtctatgatggtattcataggtctttgacaagtgctgggaaatttgatgaagctgaaaag |
43444045 |
T |
|
| Q |
288 |
attgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaagacgggtaggtttgaagaagcac |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
43444046 |
attgtcgagaccatgaaaaatgatggctacgagccagatagcatcacctacagtcaacttattttcggactttgtaagacggggaggtttgaagaagcac |
43444145 |
T |
|
| Q |
388 |
ttaaggtaattgatgatatgcaagct |
413 |
Q |
| |
|
|||||| | | ||||||||| ||||| |
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|
| T |
43444146 |
ttaaggcattcgatgatatgaaagct |
43444171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 188 - 413
Target Start/End: Original strand, 43427247 - 43427472
Alignment:
| Q |
188 |
taagaaattcgagtcggcagggtatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaag |
287 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
43427247 |
taagaaatttgagtcaacagggtatactctttccaaggcagtctatgatggtattcataggtctttgacaggtgctgggaaatttgatgaagctgaaaag |
43427346 |
T |
|
| Q |
288 |
attgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaagacgggtaggtttgaagaagcac |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||| | ||||| ||||||||| |
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|
| T |
43427347 |
attgtcgagaccatgaaaaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcaaagaagcac |
43427446 |
T |
|
| Q |
388 |
ttaaggtaattgatgatatgcaagct |
413 |
Q |
| |
|
|||||||||| ||| ||||||||||| |
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|
| T |
43427447 |
ttaaggtaatcgatcatatgcaagct |
43427472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 43435540 - 43435722
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43435540 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43435639 |
T |
|
| Q |
109 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgataag |
191 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
43435640 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataag |
43435722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 43443734 - 43443916
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43443734 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43443833 |
T |
|
| Q |
109 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgataag |
191 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
43443834 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataag |
43443916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 43427035 - 43427205
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||| |
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|
| T |
43427035 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
43427134 |
T |
|
| Q |
109 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatct |
179 |
Q |
| |
|
| |||||||||||||||||||||||| |||| ||| || |||||||||| |||||||| ||||| ||||| |
|
|
| T |
43427135 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatct |
43427205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 43422457 - 43422595
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
108 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||| || |||||| | | |||| || ||||||| |||||||| |||||||||| ||||||| |
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|
| T |
43422457 |
gagatgaagagtgtgaattatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagcttt |
43422556 |
T |
|
| Q |
109 |
atgagcatatgatggatagttcatatcagccatcagttc |
147 |
Q |
| |
|
| |||| |||||||||| |||||||| ||||||| |||| |
|
|
| T |
43422557 |
acgagcttatgatggatggttcatatgagccatcggttc |
43422595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 43422685 - 43422795
Alignment:
| Q |
204 |
gcagggtatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaagattgtcgagaccatga |
303 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||| || || |||| |||| |||||| ||||||||||| |||||||||| ||||| |||| |||| |
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|
| T |
43422685 |
gcagggtatactctcaccaaggaaatctatgatggaatacacaggtgtttgacaagtgtggggaaatttgacaaagctgaaaatattgttaagactatga |
43422784 |
T |
|
| Q |
304 |
aaaatgctggc |
314 |
Q |
| |
|
||||| |||| |
|
|
| T |
43422785 |
gaaatggtggc |
43422795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 40186262 - 40186092
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||| ||||||||| | |||| |
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|
| T |
40186262 |
gagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagcttcaagagaataggatgatgga---------cgggcttc |
40186172 |
T |
|
| Q |
109 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgat |
188 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||| ||| ||||||| |
|
|
| T |
40186171 |
atgagcatatgatggatagttcatacaagccatcagttctggactgcattatgcttttaaagaacatcgctgaaagcgat |
40186092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 192 - 413
Target Start/End: Complemental strand, 40186055 - 40185832
Alignment:
| Q |
192 |
aaattcgagtcggcaggg--tatactctttccaaggcagtctatgatggtattcataggtctttggcaagtgctgggaaatttgatgaagctgaaaagat |
289 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||||||||||||| | || |||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
40186055 |
aaattcgagtcgacagggggtatactctttccaaggaagtctatgatggtatccttaagtcttttacaagtgctgggaaatttgatgaagctcaaattat |
40185956 |
T |
|
| Q |
290 |
tgtcgagaccatgaaaaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaagacgggtaggtttgaagaagcactt |
389 |
Q |
| |
|
||| ||||||||| ||||||||||||| || || |||| ||||| | | | || || || |||||||| ||| | | ||||||||||||||| | |
|
|
| T |
40185955 |
tgttaagaccatgacaaatgctggctacaagccacataaactcacccataatgaaattgcttctggactttgtaagctgaggaggtttgaagaagcaagt |
40185856 |
T |
|
| Q |
390 |
aaggtaattgatgatatgcaagct |
413 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
40185855 |
aaggtaattgatgagatgcaagct |
40185832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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