View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_34 (Length: 429)
Name: NF20816_low_34
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 22 - 421
Target Start/End: Complemental strand, 31652101 - 31651702
Alignment:
| Q |
22 |
atgtggaggtactttatatcaagatataggaaaagagctttcaaacaagggtttagaagagagtgaaatggtgatgcatattaactatgatgattatgat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652101 |
atgtggaggtactttatatcaagatataggaaaagagctttcaaacaagggtttagaagagagtgaaatggtgatgcatattaactatgatgattatgat |
31652002 |
T |
|
| Q |
122 |
ggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaagatgataaaatggacattttggttaatagct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652001 |
ggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaagatgataaaatggacattttggttaatagct |
31651902 |
T |
|
| Q |
222 |
atcatcatcaaggtgttaagagacttgcacaacgttttgttccaatggcttttgctcctgatggtttgattgaagggttttatgaccctgatgcttataa |
321 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651901 |
atcatcatcaaggtgttaagagacttgcacagcgttttgttccaatggcttttgctcctgatggtttgattgaagggttttatgaccctgatgcttataa |
31651802 |
T |
|
| Q |
322 |
tccagaagagggtaagtttattatgggattgcagtttcatcccgagcgtatgaggaaagctgattcagatgaatttgattatccgggatgcccctttgct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651801 |
tccagaagagggtaagtttattatgggattgcagtttcatcccgagcggatgaggaaagctgattcagatgaatttgattatccgggatgcccctttgct |
31651702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 92 - 414
Target Start/End: Original strand, 219172 - 219497
Alignment:
| Q |
92 |
gtgatgcatattaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaag |
191 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| | || |||||| |||| ||||||||| | |||||||||||||||||||| || |
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| T |
219172 |
gtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaa |
219271 |
T |
|
| Q |
192 |
atgataaaatggac---attttggttaatagctatcatcatcaaggtgttaagagacttgcacaacgttttgttccaatggcttttgctcctgatggttt |
288 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
219272 |
atgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggttt |
219371 |
T |
|
| Q |
289 |
gattgaagggttttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtttcatcccgagcgtatgaggaaagctgattca |
388 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||| || ||||| |
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| T |
219372 |
aattgaagggttttatgacccttatgcttataatccagaagagggtaagtttattatgggtttgcaatttcaccctgagcgtatgagaaaacctaattca |
219471 |
T |
|
| Q |
389 |
gatgaatttgattatccgggatgccc |
414 |
Q |
| |
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||||| |||||||| || |||||||| |
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| T |
219472 |
gatgattttgattaccctggatgccc |
219497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 378
Target Start/End: Original strand, 49630519 - 49630739
Alignment:
| Q |
158 |
cctttgcatcattggtttaaggattctttggaagatgataaaatggacattttggttaatagctatcatcatcaaggtgttaagagacttgcacaacgtt |
257 |
Q |
| |
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||||||||| ||||||||||||| ||||| | |||||| |||||| | || |||| ||||| || || ||||| |||||||||||||||||| | | | |
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| T |
49630519 |
cctttgcatgattggtttaaggactcttttgtagatgacaaaatgcagatcatggtgaatagttaccaccatcagggtgttaagagacttgcagagagat |
49630618 |
T |
|
| Q |
258 |
ttgttccaatggcttttgctcctgatggtttgattgaagggttttatgaccctgatgcttataatccagaagagggtaagtttattatgggattgcagtt |
357 |
Q |
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||||||||||||| |||||||| ||||||||| ||||||| ||||| | || || ||| ||||| |||||||| |||||||||||||| | || || |
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| T |
49630619 |
ttgttccaatggcatttgctccagatggtttggttgaaggattttacaatccaaataattacaatcctgaagagggaaagtttattatgggccttcaatt |
49630718 |
T |
|
| Q |
358 |
tcatcccgagcgtatgaggaa |
378 |
Q |
| |
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|||||| ||| | |||||||| |
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| T |
49630719 |
tcatccagagagaatgaggaa |
49630739 |
T |
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