View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_39 (Length: 399)
Name: NF20816_low_39
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_39 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 44671570 - 44671172
Alignment:
| Q |
1 |
atgacaagattgatgataaagccgatgagtttattgctcaattttatcagcaaatgaggttgcaacgattgaataatgttgatcgtcgttatcaagagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44671570 |
atgacaagattgatgataaagccgatgagtttattgctcaattttatcagcaaatgaggttgcaacgattgaataacgttgatcgtcgttatcaagagcg |
44671471 |
T |
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| Q |
101 |
aagccaaaggtcattaggattgtgatcattatcgtgtaaaaaagtgttttgaatcataatatcnnnnnnnnnnnnnnnnncagaaacaagagcattaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44671470 |
aagccaaaggtcattaggattgtgatcattatcgtgtaaaaaagtgttttgaatcataatatcaaaacaaaaaacaaaaacagaaacaagagcattaatc |
44671371 |
T |
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| Q |
201 |
tcaaacttaaatataacctcatgcatgcttttgttaattgttcaattacgtcttgcaggtgtactataataatgtttccgatatctaatcacgtatgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44671370 |
tcaaacttaaatataacctcatgcatgcttttgttaattgttcagttacgtcttgcaggcgtactataataatgtttccgatatctaatcacgtatgtat |
44671271 |
T |
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| Q |
301 |
atgttcaaaattttctaatttctttctttttattgattattattattgatggggaaggttgaaggcaaaaagaaacagagaaatgaagaaatgttaata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44671270 |
atgttcaaaattttctaatttctttctttttattgattattattattgatggggaaggttgaaggcaaaaagaaacagagaaatgaagaaatgttaata |
44671172 |
T |
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