View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_40 (Length: 396)

Name: NF20816_low_40
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_40
NF20816_low_40
[»] chr8 (4 HSPs)
chr8 (100-233)||(37193273-37193406)
chr8 (100-233)||(37182143-37182274)
chr8 (287-319)||(3193523-3193555)
chr8 (151-227)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (99-233)||(21105366-21105500)
chr3 (167-233)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (104-231)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (104-231)||(10233990-10234117)
chr6 (106-174)||(4619835-4619903)
[»] chr2 (1 HSPs)
chr2 (287-321)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (106-174)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 37193273 - 37193406
Alignment:
Q  100 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 199  Q
    ||||||||||||||||||||  |||||| ||||||||  |||||| ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37193273 agcctgtgtttggaaactcatgaaaccacggtgaaaaatcacagtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37193372  T
Q  200 cgtgcattagcggtcactcaccgcacaaacaaac 233  Q
    |||||| ||||| |||||||||||||||||||||    
T  37193373 cgtgcagtagcgatcactcaccgcacaaacaaac 37193406  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 37182143 - 37182274
Alignment:
Q  100 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 199  Q
    ||||||||||||||||||||  ||| || ||||||||  ||  || ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37182143 agcctgtgtttggaaactcatgaaaacacggtgaaaaatca--gtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37182240  T
Q  200 cgtgcattagcggtcactcaccgcacaaacaaac 233  Q
    |||||| ||||| |||||||||||||||||||||    
T  37182241 cgtgcagtagcgatcactcaccgcacaaacaaac 37182274  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 3193523 - 3193555
Alignment:
Q  287 aatagattaaactagttgctctaaattatttaa 319  Q
    |||||||||||||||||||||||| ||||||||    
T  3193523 aatagattaaactagttgctctaatttatttaa 3193555  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 29461262 - 29461186
Alignment:
Q  151 aaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaa 227  Q
    |||||||||  | |||||||||||| |||| ||| |||| | || | |||||||  |||||||||||||||||||||    
T  29461262 aaagctacaccaactagcttctcaataccatggtaagatagactctaaacgtgcggtagcggtcactcaccgcacaa 29461186  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 21105366 - 21105500
Alignment:
Q  99 tagcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttga 198  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| || |||  |||||||||  | ||||||||| || ||||||||||||||| |||| |    
T  21105366 tagcatgtgtttgaaaactaacaaaaccatggtgaaaaggcacggttggcgtaaagctacaccaactagcttctaaataccacggtgagattgactttaa 21105465  T
Q  199 acgtgcattagcggtcactcaccgcacaaacaaac 233  Q
    || |||| |||||||||||||| ||||||||||||    
T  21105466 acatgcagtagcggtcactcacggcacaaacaaac 21105500  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 42036775 - 42036841
Alignment:
Q  167 gcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaaacaaac 233  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  42036775 gcttctcaaaaccacggtgatattgactttgaatgtgcattagcggtcactcaccgcacaaataaac 42036841  T

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Target: scaffold0495 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 10845 - 10718
Alignment:
Q  104 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 203  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10845 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10746  T
Q  204 cattagcggtcactcaccgcacaaacaa 231  Q
       |||||||||||||||| ||||||||    
T  10745 tggtagcggtcactcaccgtacaaacaa 10718  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 10234117 - 10233990
Alignment:
Q  104 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 203  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10234117 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10234018  T
Q  204 cattagcggtcactcaccgcacaaacaa 231  Q
       |||||||||||||||| ||||||||    
T  10234017 tggtagcggtcactcaccgtacaaacaa 10233990  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 4619835 - 4619903
Alignment:
Q  106 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 174  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  4619835 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 4619903  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 17854474 - 17854508
Alignment:
Q  287 aatagattaaactagttgctctaaattatttaatt 321  Q
    |||||||||||||||||||||||| ||||||||||    
T  17854474 aatagattaaactagttgctctaatttatttaatt 17854508  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 1037 - 969
Alignment:
Q  106 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 174  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  1037 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 969  T

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