View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_44 (Length: 391)
Name: NF20816_low_44
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 40751996 - 40751624
Alignment:
| Q |
1 |
gcttgaaagtataatagcttatataatggcaattccaaaagatatacaacaatggacaatgcacggattttgttgtggttattacctcagctacattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40751996 |
gcttgaaagtataatagcttatataatggcaattccaaaagatatacaacaatggataatgcacggattttgttgtggttattacctcagctacattgtg |
40751897 |
T |
|
| Q |
101 |
tccactgcgccttttgtctacaatagctaaaggtgcatcagataatttctttgcaaaagcacgtgctctcgcaacgccgcccacatcaggggaaacaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40751896 |
tccactgcgccttttgtctacaatagctaaaggtgcatcagataatttctttgcaaaagcacgtgctctcgcaacgccgcccacatcaggggaaacaacc |
40751797 |
T |
|
| Q |
201 |
accaagtcatttgaacttattgtcttactagcaagataatcaaggatcacaggctagtggaaacatcatacacaataacattagaaaacacatattgaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40751796 |
accaagtcatttgaacttattgtcttactagcaagataatcaaggatcacaggctagtggaaacatcatacacaataacattagaaaacac--attgaag |
40751699 |
T |
|
| Q |
301 |
attgatgaaacaaactacaaccattctgaggagctaataacttacctgacaatgcacatgatccacaggaatatc |
375 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40751698 |
attgatgaaacaaattacaaccattctgaggagataataacttacctgacaatgcacatgatccacaggaatatc |
40751624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 2340320 - 2340449
Alignment:
| Q |
126 |
gctaaaggtgcatcagataatttctttgcaaaagcacgtgctctcgcaacgccgcccacatcaggggaaacaaccaccaagtcatttgaacttattgtct |
225 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||||||||||| || || || || ||||| || || ||||| ||||| |||| ||||| || |||| |
|
|
| T |
2340320 |
gctaaaggagcatcagataactttttggcaaaagcacgtgctcgagctacaccaccaacatctggcgagacaactaccaaatcatctgaacaaatagtct |
2340419 |
T |
|
| Q |
226 |
tactagcaagataatcaaggatcacaggct |
255 |
Q |
| |
|
| || ||||| ||||| || || ||||||| |
|
|
| T |
2340420 |
tgcttgcaaggtaatcgagtataacaggct |
2340449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University