View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_46 (Length: 389)
Name: NF20816_low_46
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 17686009 - 17685638
Alignment:
| Q |
6 |
tctttcagtaaatttctaaaaaagataatattttgttatcaattattgttacaagaccatcgatctttcattgctcttcaatttgacaattaacaggtga |
105 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17686009 |
tctttcagtaaatttctaaaaaaaa-aatattttgttatcaattattgttacaagaccatcgatctttcattgctcttcaatttgacaattaacaggtga |
17685911 |
T |
|
| Q |
106 |
ttgattgaggcgtaacataacatgttatcagatttgcaaagaccagtctaggttattcattccaaccctaatcaattttagggnnnnnnnggaatctgag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17685910 |
ttgattgaggcgtaacataacatgttatcagatttgcaaagaccagtctaggttattcattccaaccctaatcaattttagggtttttt-ggaatctgag |
17685812 |
T |
|
| Q |
206 |
taagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaacattctaca |
305 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17685811 |
taagacgaaagttgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaacattctaca |
17685712 |
T |
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| Q |
306 |
acttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
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| T |
17685711 |
acttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
17685638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 196 - 379
Target Start/End: Complemental strand, 17692856 - 17692673
Alignment:
| Q |
196 |
ggaatctgagtaagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattgga |
295 |
Q |
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| T |
17692856 |
ggaatctgagtaagaagaaagttgcgttcgagtttttgttagaaagagaagatgaattttcgagttgtaagtgatcccaaatattttgacaagaattgga |
17692757 |
T |
|
| Q |
296 |
acattctacaacttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
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| T |
17692756 |
acattctacaacatgccattcgtgagatattcaaatgcaacgacaacgctaggcattttagttttgcagagcttcacaggttct |
17692673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 17704143 - 17703991
Alignment:
| Q |
227 |
gttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaacattctacaacttgcaatttgtgagatatt |
326 |
Q |
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||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
17704143 |
gttttcgctagaaacagaagatgaattttcgagtcgcaagtgatccggaatattttgacaagaattggaacattctaaaacatgcaattcgtgagatatt |
17704044 |
T |
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| Q |
327 |
caaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
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| T |
17704043 |
caaatgctaccacaacgctaggcatcttagtttcggagagcttcacaggttct |
17703991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 14659144 - 14659524
Alignment:
| Q |
1 |
tcgtttctttcagtaaatt-tctaaaaaagataatatt---ttgttatcaattattgttacaagaccatcgatctttcattgctcttcaatttgacaatt |
96 |
Q |
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|||| |||||||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14659144 |
tcgtctctttcagtaaattctctcaaaaa-ataatattgttttgttatcaatcattgttacaagaccatcgatctttcattgctcttcaatttgacaatt |
14659242 |
T |
|
| Q |
97 |
aacaggtgattgattgaggcgtaacataacatgttatcagatttgcaaagaccagtctaggttattcattccaaccctaatcaattttagggnnnnnnng |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14659243 |
aacaggtgattgattgaggcgtaacataacatgttatcagatttgcaaagaccagtctaggttattcattccaaccctaatcaattttagggtttttt-g |
14659341 |
T |
|
| Q |
197 |
gaatctgagtaagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaa |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14659342 |
gaatctgagtaagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaa |
14659441 |
T |
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| Q |
297 |
cattctacaacttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14659442 |
cattctacaacttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
14659524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 196 - 379
Target Start/End: Original strand, 14650902 - 14651085
Alignment:
| Q |
196 |
ggaatctgagtaagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattgga |
295 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
14650902 |
ggaatctgagtaagaagaaagttgcgttcgagttttcgttagaaagagaggatgaattttcgagttgtaagtgatccgaaatattttgacaagaattgga |
14651001 |
T |
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| Q |
296 |
acattctacaacttgcaatttgtgagatattcaaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
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|||||||||||| ||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14651002 |
acattctacaacatgcaattcgtgagatattcaaatgcaacgacaacgctaggcatcttagttttgcagagcttcacaggttct |
14651085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 14625396 - 14625548
Alignment:
| Q |
227 |
gttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattggaacattctacaacttgcaatttgtgagatatt |
326 |
Q |
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||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||| |
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| T |
14625396 |
gttttcgctagaaacagaagatgaattttcgagtcgcaagtgatccggaatattttgacaagaattggaacattttaaaacatgcaattcgtgagatatt |
14625495 |
T |
|
| Q |
327 |
caaatgctaccacaacgctaggcatcttagtttcgcagagcttcacaggttct |
379 |
Q |
| |
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||||||| || |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14625496 |
caaatgcaacgacaacgctaggcatcttagtttcggagagcttcacaggttct |
14625548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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