View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_49 (Length: 373)
Name: NF20816_low_49
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 32679764 - 32679818
Alignment:
| Q |
302 |
tatgaataatgatagtaacaaaaatggacagtttataaagagaagaatcgcatat |
356 |
Q |
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| T |
32679764 |
tatgaataataattgtaacaaaaatggacagtttataaagagaggaatcacatat |
32679818 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 32679510 - 32679548
Alignment:
| Q |
52 |
catattctaacttttttaaatcaatttgtataacattta |
90 |
Q |
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| T |
32679510 |
catattctaacttttttcaatcaatttgtataacattta |
32679548 |
T |
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