View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_50 (Length: 366)

Name: NF20816_low_50
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_50
NF20816_low_50
[»] chr2 (5 HSPs)
chr2 (11-348)||(16231305-16231642)
chr2 (190-348)||(34690143-34690301)
chr2 (190-348)||(34712555-34712713)
chr2 (109-147)||(35889737-35889775)
chr2 (190-298)||(33860137-33860245)
[»] chr1 (9 HSPs)
chr1 (190-324)||(7891795-7891929)
chr1 (190-324)||(43083147-43083281)
chr1 (190-324)||(38138703-38138837)
chr1 (190-324)||(43044303-43044437)
chr1 (190-324)||(43067554-43067688)
chr1 (190-249)||(50911744-50911803)
chr1 (190-318)||(43077437-43077565)
chr1 (190-324)||(3300037-3300171)
chr1 (190-315)||(45984545-45984670)
[»] chr4 (2 HSPs)
chr4 (196-322)||(4230774-4230900)
chr4 (188-301)||(19965393-19965506)
[»] chr8 (1 HSPs)
chr8 (190-322)||(4618992-4619124)
[»] chr6 (2 HSPs)
chr6 (190-329)||(7530097-7530236)
chr6 (190-329)||(7520560-7520699)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 16231305 - 16231642
Alignment:
Q  11 catcatcaccaataactagacctgatacattcttggatggcgtttcagcggaaactgtttcaaacagtccttcttttcttttctttgatgaagtttcagc 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16231305 catcatcgccaataactagacctgatacattcttggatggcgtttcagcagaaactgtttcaaacggtccttcttttcttttctttgatgaagtttcagc 16231404  T
Q  111 atcatctttctgatcagtcgtggaaccggtcatctttgtcgctgccttgttcttataaccattcttatttacagacattatgactccaacagccacagtt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16231405 atcatctttctgatcagtcgtggaaccggtcatctttgtcgctgccttgttcttataaccattcttctttacagacattatgactccaacagccacagtt 16231504  T
Q  211 tgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatcttaacaattcctgcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16231505 tgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatcttaacaattcctgcat 16231604  T
Q  311 caccattcttcaaggacttcggttttttctctaattcc 348  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16231605 caccattcttcaaggacttcggttttttctctaattcc 16231642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 348
Target Start/End: Original strand, 34690143 - 34690301
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||    
T  34690143 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaa 34690242  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaaggacttcggttttttctctaattcc 348  Q
    ||||||||||||   | ||||||||||||||||| ||| | || || ||||| ||||||    
T  34690243 tcatcttaacaacagcggcatcaccattcttcaaagacatgggcttcttctccaattcc 34690301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 348
Target Start/End: Original strand, 34712555 - 34712713
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||    
T  34712555 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaa 34712654  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaaggacttcggttttttctctaattcc 348  Q
    ||||||||||||   | ||||||||||||||||| ||| | || || ||||| ||||||    
T  34712655 tcatcttaacaacagcggcatcaccattcttcaaagacatgggcttcttctccaattcc 34712713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 35889775 - 35889737
Alignment:
Q  109 gcatcatctttctgatcagtcgtggaaccggtcatcttt 147  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  35889775 gcatcatctttctgatcagtcgtagaaccgatcatcttt 35889737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 33860137 - 33860245
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| |||| |||||||||||||||| |||||||  || ||||||| || || | |||||| | |  || | |||| ||||||||||||||  | ||||    
T  33860137 atgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 33860236  T
Q  290 tcatcttaa 298  Q
    |||||||||    
T  33860237 tcatcttaa 33860245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 324
Target Start/End: Complemental strand, 7891929 - 7891795
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | |  ||| |||||||| |||||  | ||||    
T  7891929 atgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtgggaa 7891830  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||| ||| || ||||| ||||||||||||    
T  7891829 tcatcttaataataccagcatcgccattcttcaag 7891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 43083147 - 43083281
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||  || |  ||| |||||||| |||||  | ||||    
T  43083147 atgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaa 43083246  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||| ||| || ||||| ||||||||||||    
T  43083247 tcatcttaataataccagcatcgccattcttcaag 43083281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 324
Target Start/End: Complemental strand, 38138837 - 38138703
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||   |   | | |||| |||||||| | |||  | ||||    
T  38138837 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaa 38138738  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||||||  || ||||||||||||||||||    
T  38138737 tcatcttaacaacaccagcatcaccattcttcaag 38138703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 43044303 - 43044437
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| || || | ||||||||||  || |  ||| |||||||| |||||  | ||||    
T  43044303 atgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaa 43044402  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||| ||| || ||||| ||||||||||||    
T  43044403 tcatcttaataataccagcatcgccattcttcaag 43044437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 324
Target Start/End: Complemental strand, 43067688 - 43067554
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| || || | ||||||||||  || |  ||| |||||||| |||||  | ||||    
T  43067688 atgacgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaa 43067589  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||| ||| || ||||| ||||||||||||    
T  43067588 tcatcttaataataccagcatcgccattcttcaag 43067554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 50911744 - 50911803
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaagga 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  50911744 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaagga 50911803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 43077565 - 43077437
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| ||||||||||||||||||||| |||| |||| || |||||| ||||| | ||||||||||  || |  ||| |||||||| |||||  | ||||    
T  43077565 atgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaa 43077466  T
Q  290 tcatcttaacaattcctgcatcaccattc 318  Q
    ||||||||| ||| || ||||||||||||    
T  43077465 tcatcttaataataccagcatcaccattc 43077437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 3300037 - 3300171
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| |||||||||||||| |||||||| || |||||||| ||||| ||||| | |||||| |||  || |  ||| |||||||| |||||  | ||||    
T  3300037 atgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaa 3300136  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaag 324  Q
    ||||||||| ||| || |||||||| |||||||||    
T  3300137 tcatcttaataataccagcatcaccgttcttcaag 3300171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 315
Target Start/End: Complemental strand, 45984670 - 45984545
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| || || | |||||||  |  || |  ||| ||||||||||||||  | ||||    
T  45984670 atgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaa 45984571  T
Q  290 tcatcttaacaattcctgcatcacca 315  Q
    ||||||||| ||| || | |||||||    
T  45984570 tcatcttaataataccagtatcacca 45984545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 4230774 - 4230900
Alignment:
Q  196 ccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatct 295  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||||||||||  || |  ||| |||||||| |||||  | ||||||||||    
T  4230774 ccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatct 4230873  T
Q  296 taacaattcctgcatcaccattcttca 322  Q
    ||| ||| || ||||| ||||||||||    
T  4230874 taataataccagcatctccattcttca 4230900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 19965506 - 19965393
Alignment:
Q  188 ttatgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcatagg 287  Q
    |||||||||||| ||||||||||||||||||||||||  || ||||||  || || | |||||||| |  || | |||| ||||||||||||||    ||    
T  19965506 ttatgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcggg 19965407  T
Q  288 aatcatcttaacaa 301  Q
    ||||||||||||||    
T  19965406 aatcatcttaacaa 19965393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 322
Target Start/End: Original strand, 4618992 - 4619124
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||| || || |||||||| | |   | |  ||| |||||||| |||||  | ||||    
T  4618992 atgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 4619091  T
Q  290 tcatcttaacaattcctgcatcaccattcttca 322  Q
    ||||||||| ||| || ||||||||||||||||    
T  4619092 tcatcttaataatgccagcatcaccattcttca 4619124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 7530236 - 7530097
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||   |    ||| |||||||| |||||  | ||||    
T  7530236 atgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtctcaaccaccatgggcttggtgggaa 7530137  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaaggactt 329  Q
     ||||||||  || || |||||||||||||||||| ||||    
T  7530136 ccatcttaatgataccagcatcaccattcttcaagaactt 7530097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 7520699 - 7520560
Alignment:
Q  190 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 289  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||| | ||||||||||  ||    ||| |||||||| |||||  | ||||    
T  7520699 atgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtctcaaccaccatgggcttggtgggaa 7520600  T
Q  290 tcatcttaacaattcctgcatcaccattcttcaaggactt 329  Q
     ||||||||  || || |||||||| ||||||||| ||||    
T  7520599 ccatcttaatgataccagcatcaccgttcttcaagaactt 7520560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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