View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_51 (Length: 361)

Name: NF20816_low_51
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_51
NF20816_low_51
[»] chr1 (3 HSPs)
chr1 (225-347)||(49580476-49580610)
chr1 (101-146)||(49580419-49580464)
chr1 (63-106)||(49579903-49579946)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 49580476 - 49580610
Alignment:
Q  225 ttgtaaattagtaaactctttctctactcagcctt------------gggtccaaaaaacctttatcctcttatttttctatgaaacaaacaaagaatct 312  Q
    |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49580476 ttgtaaattagtaaactctttctctactcagccttcatcctcctattgggtccaaaaaacctttatcctcttatttttctatgaaacaaactaagaatct 49580575  T
Q  313 attaacatttcgtcaaaaacagttttggtattatt 347  Q
    ||||||||||||||||||||| |||||||||||||    
T  49580576 attaacatttcgtcaaaaacacttttggtattatt 49580610  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 49580419 - 49580464
Alignment:
Q  101 aatatatgcgtggtttctttaagaaataatattatgatacatccaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49580419 aatatatgcgtggtttctttaagaaataatattatgatacatccaa 49580464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 49579903 - 49579946
Alignment:
Q  63 tgttgtgtaaaatatgtctaatcatatctcacgatttgaatata 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  49579903 tgttgtgtaaaatatgtctaatcatatctcacgatttaaatata 49579946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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