View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_52 (Length: 360)

Name: NF20816_low_52
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_52
NF20816_low_52
[»] chr7 (8 HSPs)
chr7 (11-83)||(21221011-21221083)
chr7 (80-175)||(21218711-21218806)
chr7 (271-345)||(21216522-21216596)
chr7 (80-175)||(35205927-35206022)
chr7 (113-175)||(13888097-13888159)
chr7 (80-120)||(21220957-21220997)
chr7 (113-163)||(7328183-7328233)
chr7 (132-173)||(20414906-20414947)
[»] scaffold0128 (1 HSPs)
scaffold0128 (104-175)||(4133-4204)
[»] scaffold0064 (1 HSPs)
scaffold0064 (113-175)||(24210-24272)
[»] chr5 (1 HSPs)
chr5 (113-175)||(42298116-42298178)
[»] chr4 (1 HSPs)
chr4 (113-174)||(53774845-53774906)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 21221083 - 21221011
Alignment:
Q  11 cagagacatacacacaaatgcttccccctacaagttctgagaatgtcattatatggggaaatctttgtgtgtt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21221083 cagagacatacacacaaatgcttccccctacaagttctgagaatgtcattatatggggaaatctttgtgtgtt 21221011  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 21218806 - 21218711
Alignment:
Q  80 tgtttttatgacaattacaatggaaccgacttggttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||||||| || ||| ||||||||| || ||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  21218806 tgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttagc 21218711  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 21216596 - 21216522
Alignment:
Q  271 tccgagcaaattcaacgttattgatggtgcatgtcataatgataggatgaaagagactctttttggagttacatt 345  Q
    |||||| |||||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  21216596 tccgagtaaattcgacgttattgatggcgcatgtcatgctgataggatgaaagagactctttttggagctacatt 21216522  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 35206022 - 35205927
Alignment:
Q  80 tgtttttatgacaattacaatggaaccgacttggttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||||||| |  ||| ||||||||| || || ||||||||| |  |||||||||||||| |||| | |||||||||||||||||| |||||||||    
T  35206022 tgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaatttagc 35205927  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 13888159 - 13888097
Alignment:
Q  113 gttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||||||| || ||||| |||||||||| |||| |||||||||||||||||| |||||||||    
T  13888159 gttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaatttagc 13888097  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 21220997 - 21220957
Alignment:
Q  80 tgtttttatgacaattacaatggaaccgacttggttatatg 120  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  21220997 tgtttttatgacaatttcaatggaaccaacttggttatatg 21220957  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 7328183 - 7328233
Alignment:
Q  113 gttatatggcaactgacagaatttggagatgaaaggtcttggactcaattc 163  Q
    ||||||||| |  ||||||||||||||||||| |||||||||||| |||||    
T  7328183 gttatatggaagatgacagaatttggagatgacaggtcttggactaaattc 7328233  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 20414906 - 20414947
Alignment:
Q  132 aatttggagatgaaaggtcttggactcaattcctcaaattta 173  Q
    ||||||||||||| | |||||||||||||||||| |||||||    
T  20414906 aatttggagatgacaagtcttggactcaattccttaaattta 20414947  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 4133 - 4204
Alignment:
Q  104 accgacttggttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||| |||||||||||| |  |||||||||||||| ||||||  |||||||||||||||| |||| |||||    
T  4133 accgatttggttatatggaagatgacagaatttggaaatgaaaattcttggactcaattccacaaagttagc 4204  T

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Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 24210 - 24272
Alignment:
Q  113 gttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||||||| |  ||||||||| ||||||||||| |||||| ||||||||||| |||||||||    
T  24210 gttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaatttagc 24272  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 42298116 - 42298178
Alignment:
Q  113 gttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttagc 175  Q
    ||||||||| |  ||| |||||||||||||||||  |||||||||||||||| |||| |||||    
T  42298116 gttatatggaagatgatagaatttggagatgaaaattcttggactcaattccacaaagttagc 42298178  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 53774845 - 53774906
Alignment:
Q  113 gttatatggcaactgacagaatttggagatgaaaggtcttggactcaattcctcaaatttag 174  Q
    |||||||||||| |||  |||||||||| ||||  |||||||||||||||||| ||| ||||    
T  53774845 gttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattag 53774906  T

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