View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_54 (Length: 354)
Name: NF20816_low_54
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 55174922 - 55175245
Alignment:
| Q |
13 |
aatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtt |
112 |
Q |
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| T |
55174922 |
aatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtt |
55175021 |
T |
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| Q |
113 |
tatattcaataaaagctgacatctagagtgaaagaatgacacagttttatgcagaaagtgaacctttgagattcatgtaatcgtagtaatcacatatatc |
212 |
Q |
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| T |
55175022 |
tatattcaataaaagctgacatctagagtgaaagaatgacacagttttatgcagaaagtgaacctttgagattcatgtaatcgtagtaatcacatatatc |
55175121 |
T |
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| Q |
213 |
taatgaccaagattgaaggacactcatcaactatattatcattattcctatttaatttatgttccctgattgttgtagttttcatctgnnnnnnnctctc |
312 |
Q |
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| T |
55175122 |
taatgaccaagattgaaggacactcatcaactatattatcattattcctatttaatttatgttccctgattgttgtagttttcatctgtttttttctctc |
55175221 |
T |
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| Q |
313 |
attaaaagtaaaaaacttaaccgt |
336 |
Q |
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| T |
55175222 |
attaaaagtaaaaaacttaaccgt |
55175245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 67 - 297
Target Start/End: Original strand, 50906872 - 50907120
Alignment:
| Q |
67 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca-----cagtttt |
160 |
Q |
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| T |
50906872 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgacaactttatgcttt |
50906971 |
T |
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| Q |
161 |
atgcagaaagtgaacctttgagattcatgtaatcgtagtaatcacatatatctaatgaccaagattgaagg-------------acactcatcaactata |
247 |
Q |
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| T |
50906972 |
atgcacaaactgaacctttgagattcgtatagttgaagtaatcacagatatctagtg-ccaagattgaaggacactagtctgctacactcatcttgttta |
50907070 |
T |
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| Q |
248 |
ttatcattattcctatttaatttatgttccctgattgttgtagttttcat |
297 |
Q |
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| T |
50907071 |
ttatcattatttctatttaatttatgttccctgattgtcgtacttttcat |
50907120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 55178607 - 55178669
Alignment:
| Q |
13 |
aatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatcttttt |
77 |
Q |
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| T |
55178607 |
aatatcaatgcacgaagctcagataagggaaagaaacaccgaaactc--gtaacattatcttttt |
55178669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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