View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_55 (Length: 344)
Name: NF20816_low_55
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 120 - 324
Target Start/End: Original strand, 24937485 - 24937689
Alignment:
| Q |
120 |
gtacgatattgtactagtcaaccaaggattgatgcattatattactagtactaggtttgtttcctaaatatataactctttcttttttactaagataaaa |
219 |
Q |
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| T |
24937485 |
gtacgatattgtactagtcaaccaaggattgatgcattatattactagtactaggtttgtttcctaaatatataactctttcttttttactaagataaaa |
24937584 |
T |
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| Q |
220 |
tctagggttaggatgattcatcagtttcaggcatggaatacgttaactaggatttcttatgtgcaagtatatatggtcaaac-aataataaatagataag |
318 |
Q |
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| T |
24937585 |
tctagggttaggatgattcatcag-ttcaagcatggaagacgttaactaggatttcttatgtgcaagtatatatggtcaaacaaataataaatagatagg |
24937683 |
T |
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| Q |
319 |
aaatga |
324 |
Q |
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|||||| |
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| T |
24937684 |
aaatga |
24937689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 24937369 - 24937450
Alignment:
| Q |
4 |
tatatatattgtcacttgtttcatttcatgagcaagatcggttcatagcggaacttcctatgtttgtggatttgttgtcaca |
85 |
Q |
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| T |
24937369 |
tatatatattgtcacttgtttcatttcatgagcaagatcggttcatagcggaacttcctatgattgtggatttgttgtcaca |
24937450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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