View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_57 (Length: 330)

Name: NF20816_low_57
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_57
NF20816_low_57
[»] chr1 (1 HSPs)
chr1 (1-318)||(8141810-8142120)
[»] chr5 (2 HSPs)
chr5 (132-298)||(22210106-22210273)
chr5 (165-269)||(5351790-5351895)
[»] chr2 (3 HSPs)
chr2 (163-298)||(9130594-9130730)
chr2 (1-114)||(9130812-9130930)
chr2 (165-248)||(31037298-31037381)
[»] chr4 (1 HSPs)
chr4 (165-254)||(34730207-34730297)
[»] chr7 (1 HSPs)
chr7 (165-250)||(17907155-17907241)
[»] chr3 (4 HSPs)
chr3 (165-242)||(34786053-34786131)
chr3 (165-269)||(20166768-20166873)
chr3 (165-269)||(47652330-47652434)
chr3 (79-125)||(47953982-47954028)
[»] chr6 (1 HSPs)
chr6 (160-298)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8142120 - 8141810
Alignment:
Q  1 aaatttaaaatgacttcatataaaacaaaaaatctcaatagttaaacaactagtaaagcatgatatatgcataaattattgcagaaagccattaacagaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  8142120 aaatttaaaatgacttcatataaaacaaaaaatctccatagttaaacaactagtaaagcatgat----gcataaattattgcagaaagccattaacagaa 8142025  T
Q  101 attaaaagtgacttaaaactcaaaaaatctaaataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||    
T  8142024 attaaaagtgacttaaaactcaaaaaatctaaataattggtagttttaagttttaatcggtgataaaagatctaattattctc---ttctccaacataat 8141928  T
Q  201 attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattctaccaagata 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8141927 attatcctcattttcagataatgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattccaccaagata 8141828  T
Q  301 ggttttaggtactatatt 318  Q
    | |||| |||||||||||    
T  8141827 gatttttggtactatatt 8141810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 298
Target Start/End: Original strand, 22210106 - 22210273
Alignment:
Q  132 aataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcata 230  Q
    |||||||||||||| ||||||||||   |||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |    
T  22210106 aataattggtagttctaagttctaactagtgataaaagatatagttattctcctcttccccaacataatcattatcctcattttcagatagtgaggcaca 22210205  T
Q  231 tccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattctaccaaga 298  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||| |||| |||||||| ||||    
T  22210206 tccttcaacttcttctattgaatcatctaaatcaatatcctcaaactctacttccgattctactaaga 22210273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 5351895 - 5351790
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 263  Q
    |||||||| |||||||||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||| |||||| || |||||    
T  5351895 aaaagatccaattattctcctcttccccaacataatcattatccccatttccacatagtgaggcatatccttcaacttcttcaactgaatcctcagaatc 5351796  T
Q  264 aatgtc 269  Q
    ||||||    
T  5351795 aatgtc 5351790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 9130730 - 9130594
Alignment:
Q  163 ataaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaa 261  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||  || |||    
T  9130730 ataaaagatctaattattctcctcttccccaacataataattgtcctcattttcagatagtgaggcatttccgtcaacttcttcaattgaattgtctgaa 9130631  T
Q  262 tcaatgtcctcaaactctgcttctgattctaccaaga 298  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  9130630 tcaatttccttaaactctgcttctgattctaccaaga 9130594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9130930 - 9130812
Alignment:
Q  1 aaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatg----atatatgcataaattattgcagaaagccattaa 95  Q
    ||||| ||||||| || ||||| |||  ||||||||||||||| |||||||||||| | | ||    |||  |||| | |||||||||||||||||| |     
T  9130930 aaattaaaaatgaattgatatacaacttaaaatctcaatagttcaaacaactagtagaacctggtgcatagttgcacacattattgcagaaagccataag 9130831  T
Q  96 cagaaattaaaagtgactt 114  Q
    |||||||||||||||||||    
T  9130830 cagaaattaaaagtgactt 9130812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 31037298 - 31037381
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaat 248  Q
    |||||||||| |||||||| ||||| ||| |||||| ||||||| |||  | |||| ||||||||||||||||||||| ||||||    
T  31037298 aaaagatctatttattctcttcttccccagcataatcattatccacatact-agatcgtgaggcatatccttcaactttttcaat 31037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 34730207 - 34730297
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatc 254  Q
    ||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34730207 aaaagatctaattattctcctcttccctaacatcatcattatcctcattttcagatagtgaggcatatccttcaactttttaaatggaatc 34730297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 17907155 - 17907241
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattg 250  Q
    |||||||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  17907155 aaaagatctaattactctcctcttcccaaacataataattatcttcattttcagatagtgaggcatatcgttcaacttcttaaattg 17907241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 34786053 - 34786131
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttc 242  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||| ||||||||||||    
T  34786053 aaaagatctaattattctcctcttccccaacataatcattatcctcattttcagttagttaggcatctccttcaacttc 34786131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 20166873 - 20166768
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 263  Q
    |||||||||||||||| |||| ||  | |||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||| ||||| || |||||    
T  20166873 aaaagatctaattattttcctatttcctaacataatcattatcctcattttgcgatagtgaggcatatccttcaacttcttaaatagaatcctcagaatc 20166774  T
Q  264 aatgtc 269  Q
    ||||||    
T  20166773 aatgtc 20166768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 47652330 - 47652434
Alignment:
Q  165 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 263  Q
    ||||||||||| |||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||||||||||||||||| || |||||| | | ||||    
T  47652330 aaaagatctaactattctcctcttccacaacataatcgttatcttcatttttagatagtgaggcatatccttcaacttctt-aaatgaatccttgtaatc 47652428  T
Q  264 aatgtc 269  Q
    ||||||    
T  47652429 aatgtc 47652434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 47953982 - 47954028
Alignment:
Q  79 ttgcagaaagccattaacagaaattaaaagtgacttaaaactcaaaa 125  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  47953982 ttgcagaaagccagaaacataaattaaaaatgacttaaaactcaaaa 47954028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 490848 - 490991
Alignment:
Q  160 gtgataaaagatctaattattctcctcttctcc-aacataat-attatcctcatt---ttcagatagtgaggcatatccttcaacttcttcaattgaatc 254  Q
    |||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||   ||||| |  ||| |||||||  ||||||| ||||||||||||    
T  490848 gtgataaaagatctaattatgctcctcttcccccaacataatcattatcctcgttgttttcaggttttgaagcatatctgtcaactttttcaattgaatc 490947  T
Q  255 atcggaatcaatgtcctcaaactctgcttctgattctaccaaga 298  Q
    | | |||||||| ||||| |||||||||| ||||| ||||||||    
T  490948 acctgaatcaatatcctctaactctgcttttgattataccaaga 490991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University