View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_60 (Length: 319)

Name: NF20816_low_60
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_60
NF20816_low_60
[»] chr1 (3 HSPs)
chr1 (18-108)||(24791759-24791849)
chr1 (173-244)||(24791622-24791693)
chr1 (173-244)||(24815842-24815913)
[»] chr2 (6 HSPs)
chr2 (18-108)||(10183554-10183644)
chr2 (173-246)||(29749296-29749369)
chr2 (18-108)||(29749141-29749231)
chr2 (18-107)||(10177334-10177423)
chr2 (173-244)||(10177487-10177558)
chr2 (173-246)||(10183425-10183491)
[»] chr4 (2 HSPs)
chr4 (18-101)||(47393210-47393293)
chr4 (173-244)||(47393328-47393399)
[»] scaffold0848 (2 HSPs)
scaffold0848 (18-108)||(2581-2671)
scaffold0848 (173-243)||(2446-2516)
[»] chr3 (2 HSPs)
chr3 (18-108)||(3979973-3980063)
chr3 (173-244)||(3980126-3980197)
[»] chr6 (3 HSPs)
chr6 (18-108)||(8298485-8298575)
chr6 (173-244)||(8298639-8298710)
chr6 (244-299)||(17923939-17923994)
[»] chr5 (1 HSPs)
chr5 (197-237)||(21545111-21545151)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 24791849 - 24791759
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24791849 gcaagatgtcgattagaatctacaaagttcatacaaaatatgtgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 24791759  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 24791693 - 24791622
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24791693 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 24791622  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 24815913 - 24815842
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24815913 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 24815842  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 10183644 - 10183554
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10183644 gcaagatgtcgattagaatctacaaagttcatacaaaatatgtgatcatgacagcaaatgtgttattttctcttttgcactgatatttcac 10183554  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 29749296 - 29749369
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctctaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29749296 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctctaa 29749369  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 29749141 - 29749231
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29749141 gcaagatgtcgattaaaatctacaaagttcatacagaatatgtgatcatgacagcaaatgtgttattttctcttttgcactgatatttcac 29749231  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 10177334 - 10177423
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttca 107  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  10177334 gcaagatgtcgattagaatctacaaagttcatacagaatatgtgatcatgacaacaaatgtgttattttctcttttgcactgatatttca 10177423  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 10177487 - 10177558
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10177487 gagactgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 10177558  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 10183491 - 10183425
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctctaa 246  Q
    ||||||||||||||||||||||  ||||||     |||||||||||||||||||||||||||||||||||||||    
T  10183491 gagagtgcacgtgagggaggtg--gtcgtg-----cgtcgctgctatatgtcgcaccatatagcagttctctaa 10183425  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 47393210 - 47393293
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgat 101  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47393210 gcaagatgtcgattagaatctacaaagttcatacaaaatatgtgatcatgacagcaaatgtgttattttctcttctgcactgat 47393293  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 47393328 - 47393399
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47393328 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 47393399  T

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Target: scaffold0848 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 2671 - 2581
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2671 gcaagatgtcgattagactctacaaagttcatacaaaatatgtgatcatgacagcaaatgtgttattttctcttatgcactgatatttcac 2581  T

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Target: scaffold0848; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 2516 - 2446
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctc 2446  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 3979973 - 3980063
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3979973 gcaagatgtcgattagaatctacaaagttcatacagaatatgtgatcatgacagcaaatgtgttattttctcttttgcactgatatttcac 3980063  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 3980126 - 3980197
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3980126 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 3980197  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 8298485 - 8298575
Alignment:
Q  18 gcaagatgtcaattagaatctacaaagttcatacaaaatatatgatcatgacagcaaatgtgttattttctcttctgcactgatatttcac 108  Q
    |||||||||| ||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  8298485 gcaagatgtcgattagaatctagaaagttcatacagaatatgtgatcatgagagcaaatgtgttattttctcttttgcactgatatttcac 8298575  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 8298639 - 8298710
Alignment:
Q  173 gagagtgcacgtgagggaggtgacgtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttctct 244  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8298639 gagagtgcacatgagggaggtgacgtcgtgcgtttcgtcgctgctatgtgtcgcaccatatagcagttctct 8298710  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 17923994 - 17923939
Alignment:
Q  244 taaccaaatatacaacaatggaagcactagcagaagggttatggggactagcagac 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17923994 taaccaaatatacaacaatggaagcaccagcagaagggttatggggactagcagac 17923939  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 21545151 - 21545111
Alignment:
Q  197 gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagca 237  Q
    |||||||| ||||| | ||||||||||||||||||||||||    
T  21545151 gtcgtgcgattcgtgggtgctatatgtcgcaccatatagca 21545111  T

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