View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_62 (Length: 315)
Name: NF20816_low_62
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 7623249 - 7623526
Alignment:
| Q |
20 |
gtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7623249 |
gtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaacaat |
7623348 |
T |
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| Q |
120 |
ggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7623349 |
ggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttcccaattcaactt |
7623448 |
T |
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| Q |
220 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatattt |
297 |
Q |
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|||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
7623449 |
cttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatattt |
7623526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 7636341 - 7636618
Alignment:
| Q |
20 |
gtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataat |
119 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| || ||| |
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| T |
7636341 |
gtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaat |
7636440 |
T |
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| Q |
120 |
ggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactt |
219 |
Q |
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| T |
7636441 |
ggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcttttgtccacttcccaattcaactt |
7636540 |
T |
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| Q |
220 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatattt |
297 |
Q |
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| T |
7636541 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatattt |
7636618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 7629558 - 7629835
Alignment:
| Q |
20 |
gtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataat |
119 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||| || ||| |
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| T |
7629558 |
gtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatccaaccaaacaat |
7629657 |
T |
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| Q |
120 |
ggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactt |
219 |
Q |
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||||||| ||| ||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7629658 |
ggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactc |
7629757 |
T |
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| Q |
220 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatattt |
297 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7629758 |
cttcttcataatcacaaacatatgttttcccaaaagctatcttacatataattgtatttgtgagagacatcaatattt |
7629835 |
T |
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