View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_66 (Length: 301)
Name: NF20816_low_66
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 115213 - 114937
Alignment:
| Q |
13 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115213 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
115114 |
T |
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| Q |
113 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgagg |
212 |
Q |
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| T |
115113 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgagg |
115014 |
T |
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| Q |
213 |
cagttagttggattgcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatt |
289 |
Q |
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| T |
115013 |
cagttagttggatttcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatt |
114937 |
T |
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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 36329904 - 36330092
Alignment:
| Q |
13 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
112 |
Q |
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|||||||| |||||| ||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||| ||||||| |||||||| |||| |
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| T |
36329904 |
aaaattaagttctaacgaatctaacaagttctatctaattgttgtgagataattcatatttaggaataattac------ttgtaattcaagtaagtagtg |
36329997 |
T |
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| Q |
113 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgag |
211 |
Q |
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| T |
36329998 |
aatcgattcatgaattgatttatattgtgcaaataactgttttagttagt----tagtgacttgttgaacaagtcagaggagttacttagtttgttgag |
36330092 |
T |
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