View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_68 (Length: 297)
Name: NF20816_low_68
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 41028687 - 41028421
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
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| T |
41028687 |
acagaagggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttgaagt--ataatgaca |
41028590 |
T |
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| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41028589 |
aggttaatggccgcaaaacacaggttttgaatcttttgattccgtgctatttgaagtaaccgcgacatggcaaaagcttcaaaaagagtaggatcagcac |
41028490 |
T |
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| Q |
212 |
aaatttcctctgtttcacaagccaagagagccacactattgttgcaatgggattgttttccagcattat |
280 |
Q |
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| T |
41028489 |
aaatttcctctgtttcacaagccaagagagccacactattgttgcaatgggattgttttccagcattat |
41028421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 41035530 - 41035306
Alignment:
| Q |
12 |
acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca |
111 |
Q |
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||||| ||||| | |||||||| |||| |||| ||||||||| | |||||||| ||||| ||||| |||||||||||||||| |||||| ||| ||| |
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| T |
41035530 |
acagaagggtagaccctaactacgagccccattattcaacttatgtgtcaattgaatatctcccagctgctgcatgatgtctttgcagtccaaaataaca |
41035431 |
T |
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| Q |
112 |
aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac |
211 |
Q |
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| T |
41035430 |
aggttaatggctgcaaaacacaggttttgaatc--ttgattccttgctatttgaagtcaccgcgccatggcaaaagcttcagaaagagtaggatcaacac |
41035333 |
T |
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| Q |
212 |
aaatttcctctgtttcacaagccaaga |
238 |
Q |
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| T |
41035332 |
aaatttcctctgtttcacaagctaaga |
41035306 |
T |
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