View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_71 (Length: 289)
Name: NF20816_low_71
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 48249226 - 48249509
Alignment:
| Q |
1 |
cattagacacacaatataagaaagaataccgtaaaagttgagtacattgttaagtaatccaaagttgaaaccacattatattagtaagttaactcacttg |
100 |
Q |
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| T |
48249226 |
cattagacacacaatataagaaacaataccgtaaaagttgagtacattgttaagtaatccaaagttgaaaccacattatattagtaagttaactcacttg |
48249325 |
T |
|
| Q |
101 |
gggaagtagtttttcaaatcagccttatccaccggaattcttgtagaaattgcttccatctgatcattcctgtttgcacacagcaaatgttacatttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48249326 |
gggaagtagtttttcaaatcagccttatccaccggaattcttgtagaaattgcttccatctgatcattcctgtttgcacacagcaaatgttacatttcaa |
48249425 |
T |
|
| Q |
201 |
agcaaaacgttaagtttcgattttccaaatgaactttaatgagaaaataactcacgaaaatttaagatttgggtctgtgctgct |
284 |
Q |
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| T |
48249426 |
agcaaaacgttaagtttcgattttccaaatgaactttaatgagaaaataactcacgaaaatttaagatttgggtttgtgctgct |
48249509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 18813669 - 18813432
Alignment:
| Q |
46 |
attgttaagtaatccaaagttgaaaccacattatattagtaagttaactcacttggggaagtagtttttcaaatcagccttatccaccggaattcttgta |
145 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18813669 |
attgttaagtaatccatagctgaaaccacattatattagtaagttgactcacttggggaagtagtttttgaaatcagccttatccaccggaattcttgta |
18813570 |
T |
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| Q |
146 |
gaaattgcttccatctgatcattcctgtttgcacacagcaaatgttacatttcaaagcaaaacgttaagtttcgattttccaaatgaactttaatgagaa |
245 |
Q |
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|||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
18813569 |
gaaattgcttccatctgatcattcgtgtttgaacacagaaaatgttacatttcaaagcaaaacattaagtatcaattttccaaatgaactttaatgagaa |
18813470 |
T |
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| Q |
246 |
aataactcacgaaaatttaagatttgggtctgtgctgct |
284 |
Q |
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||| ||||||||||||||||||||||||| ||||||||| |
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| T |
18813469 |
aat-actcacgaaaatttaagatttgggtttgtgctgct |
18813432 |
T |
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