View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_72 (Length: 288)
Name: NF20816_low_72
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 15719079 - 15718804
Alignment:
| Q |
7 |
gtgagaagaaatatatgatattgctttaattatctcagtgtcccaatggtaaccgtaacctctaccggttctttcatcatcatgatttccatgcttcaat |
106 |
Q |
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| T |
15719079 |
gtgagaagaaatatatgatatgaccttaattatctcagtgtcccattggtaaccgtaacctctaccggttctttcatcatcatgatttccatgcttcaat |
15718980 |
T |
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| Q |
107 |
tg----------tttgattctttgcggttagttttgtagtttttgggaat---tcggttaacccattattctaagtagttattgcaaacgtaaattacta |
193 |
Q |
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| T |
15718979 |
ttcgctttattctttgcttctctgcggttagttttgtattttttgggaaaggatcggttaacatattcttctaagtagttattgcaaacgtaaattacta |
15718880 |
T |
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| Q |
194 |
aattatacattcaattacttcttaaagttgaagaaattgaagggtaatttgggaatagaaaatatgctacaccaaa |
269 |
Q |
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| T |
15718879 |
aattatgcattcagttactttttaaaattgaagaaattgaagggtaatttgggaatagaaaatatgctacaccaaa |
15718804 |
T |
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Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 32723995 - 32723824
Alignment:
| Q |
102 |
tcaattgtttgattctttgcggttagttttgtagtttttgggaat---tcggttaacccattattctaagtagttattgcaaacgtaaattactaaatta |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
32723995 |
tcaattgtttgattctttgcggttagttttgtagattttgggaaaggatcggttaacctattcttctaagtagttattgcaaacgtaaattattaaatta |
32723896 |
T |
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| Q |
199 |
tacattcaattacttcttaaagttgaagaaattgaagggtaatttgggaatagaaaatatgctacaccaaaa |
270 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32723895 |
tacaatcagttacttcttaaagttgaagaaattgaagggtaatttggaaatagaaaatatgctacaccaaaa |
32723824 |
T |
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