View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_73 (Length: 286)
Name: NF20816_low_73
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_73 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 29809185 - 29808904
Alignment:
| Q |
5 |
ggtaaattattcttttgcaagacactactatcctttatttgccctatttaagacaagctagttgcatgtgtattt-cacttcaaattctacactatagtt |
103 |
Q |
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| T |
29809185 |
ggtaaactattcttttgcaagacactactaccctttatt-gccctatttaaggcaagctagttgcatgtgtattttcacttaaaattctacactatagtt |
29809087 |
T |
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| Q |
104 |
ctcnnnnnnncttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtgagtagtgttt |
203 |
Q |
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| T |
29809086 |
ctctttttttcttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtgagtagtgttt |
29808987 |
T |
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| Q |
204 |
ctttatccttaatctaacaccatcatgtctttgtttactcaattaaccagtttatatctcgacaaaatctcaattaacatagt |
286 |
Q |
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| T |
29808986 |
ctttatccttaatctaacaccatcatgtctttgtttactcaattaaccagtttatatcttgacaaaatctcaattaacatagt |
29808904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 29801720 - 29801654
Alignment:
| Q |
127 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtg |
193 |
Q |
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| T |
29801720 |
atggctcgttcacttcctttggtttccaccatctttgttttttttcttcttcttgtggccactggtg |
29801654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 29804838 - 29804772
Alignment:
| Q |
127 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtg |
193 |
Q |
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| T |
29804838 |
atggctcgttcagtgtctttggtttccaccatctttgtcttttttcttcttattgtggccactggtg |
29804772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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