View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_8 (Length: 730)

Name: NF20816_low_8
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_8
NF20816_low_8
[»] chr3 (8 HSPs)
chr3 (317-714)||(49187614-49188011)
chr3 (11-258)||(49188070-49188317)
chr3 (11-209)||(49212972-49213170)
chr3 (11-232)||(49191833-49192053)
chr3 (11-212)||(49202958-49203159)
chr3 (11-209)||(49208132-49208330)
chr3 (395-510)||(49202535-49202650)
chr3 (424-520)||(49191354-49191451)
[»] chr1 (5 HSPs)
chr1 (11-252)||(37030590-37030828)
chr1 (11-209)||(32592496-32592694)
chr1 (84-209)||(31527272-31527397)
chr1 (147-228)||(51824272-51824352)
chr1 (15-141)||(51824717-51824843)
[»] chr8 (1 HSPs)
chr8 (11-209)||(26756496-26756696)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 317 - 714
Target Start/End: Complemental strand, 49188011 - 49187614
Alignment:
Q  317 tactgtgatttaattttggcacctctttgataacactaattacattctaatggagtattttaaagacaacttttgtggactaatgtaaagatattctaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188011 tactgtgatttaattttggcacctctttgataacactaattacattctaatggagtattttaaagacaacttttgtggactaatgtaaagatattctaat 49187912  T
Q  417 ttttaaaatactctattcagttcattattgattatgttatatggaatagtaaatctgcattctttaaataattaggctacttgatttgttctcttagttt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  49187911 ttttaaaatactctattcagttcattattgattatgttatatggaatagtaaatttgcattctttaaataattagactacttgatctgttctcttagttt 49187812  T
Q  517 tgtcgtcataaatgttttatataggatcaaagatatacacatgagtataggatcatagttggccattgagtgtttcccaaaagtcagagtccctcgccag 616  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187811 tgtcgtgataaatgttttatataggatcaaagatatacacatgagtataggatcatagttggccattgagtgtttcccaaaagtcagagtccctcgccag 49187712  T
Q  617 tacaatgagaagttggcctttgattgtttcctaattgatggtaccgaaactccatagttaatttacctatgaattattatacaattaagtataatttc 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187711 tacaatgagaagttggcctttgattgtttcctaattgatggtaccgaaactccatagttaatttacctatgaattattatacaattaagtataatttc 49187614  T

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Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 49188317 - 49188070
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188317 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 49188218  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagtt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49188217 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtt 49188118  T
Q  211 tagtccaatgcaaatatatatataacttcattcattttttatttgctg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188117 tagtccaatgcaaatatatatataacttcattcattttttatttgctg 49188070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 49213170 - 49212972
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    |||||| |||||||| || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  49213170 taattcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttg 49213071  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagt 209  Q
    |||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  49213070 caaggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagt 49212972  T

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Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 49192053 - 49191833
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||    || || || ||||||||||| ||||||||     
T  49192053 taattctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagtta 49191954  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagtt 210  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  49191953 caaggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt 49191854  T
Q  211 tagtccaatgcaaatatatata 232  Q
    |||| | |||||||||||||||    
T  49191853 tagtac-atgcaaatatatata 49191833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 49203159 - 49202958
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||     
T  49203159 taattctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagtta 49203060  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagtt 210  Q
    ||||||||||| || ||||||||||| |||||||| ||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  49203059 caaggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagtt 49202960  T
Q  211 ta 212  Q
    ||    
T  49202959 ta 49202958  T

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Target: chr3; HSP #6
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 49208330 - 49208132
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    |||||| |||||||||||||||||||| |||||||| | ||||||||| ||||||||  | |||||    || || || |||||||||||||||||||||    
T  49208330 taattccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttg 49208231  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagt 209  Q
    |||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||||    
T  49208230 caaggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagt 49208132  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 510
Target Start/End: Complemental strand, 49202650 - 49202535
Alignment:
Q  395 actaatgtaaagatattctaatttttaaaatactctattcagttcattattgattatgttatatggaatagtaaatctgcattctttaaataattaggct 494  Q
    |||||||||||||||||||| ||||||| ||| | |||||| || |||||||||| || ||||||||  ||| ||  |||||| ||||||||||| | ||    
T  49202650 actaatgtaaagatattctattttttaatatagtttattcaattgattattgattctgctatatggagaagtcaagttgcattttttaaataattggact 49202551  T
Q  495 acttgatttgttctct 510  Q
      |||||| |||||||    
T  49202550 gtttgattagttctct 49202535  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 520
Target Start/End: Complemental strand, 49191451 - 49191354
Alignment:
Q  424 atactctattcagttcattattgattatgttatatggaatagtaaatctgca-ttctttaaataattaggctacttgatttgttctcttagttttgtc 520  Q
    ||||| |||||| || |||||||||| ||||||||||| |||| ||  |||| || ||||||||| | | |||||||||||||||||||  |||||||    
T  49191451 atactttattcaattgattattgattctgttatatggagtagtcaagttgcatttttttaaataactggactacttgatttgttctcttgtttttgtc 49191354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 37030828 - 37030590
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||     
T  37030828 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta 37030729  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagtt 210  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| || || || |||||||||||||||||||||||||||||||||||||    
T  37030728 caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt 37030629  T
Q  211 tagtccaatgcaaatatatatataacttcattcattttttat 252  Q
    |||||| ||||||  ||||||||||||| |||||||||||||    
T  37030628 tagtcc-atgcaa--atatatataacttgattcattttttat 37030590  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32592496 - 32592694
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||    || ||||| |||||||||||||||||||||    
T  32592496 taattctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttg 32592595  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagt 209  Q
    || ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  32592596 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagt 32592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 31527397 - 31527272
Alignment:
Q  84 gctgttgctctaagggaagctgagttgcaaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttactcagcaaagcta 183  Q
    ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  31527397 gctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagcta 31527298  T
Q  184 gtgttcaatatgaaaccaaggttagt 209  Q
    ||||| | ||||||||||||||||||    
T  31527297 gtgttgagtatgaaaccaaggttagt 31527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 51824352 - 51824272
Alignment:
Q  147 actgagaagcttaaagctgatttactcagcaaagctagtgttcaatatgaaaccaaggttagtttagtccaatgcaaatata 228  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51824352 actgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagtcc-atgcaaatata 51824272  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
Q  15 tctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttgcaag 114  Q
    ||||||||||| | |||||||||||||||||| ||||| ||||| |||||| |||| |||||    ||  |||| | |||||||||||||||||||||||    
T  51824843 tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag 51824744  T
Q  115 gtgaagtcgagaggatgaatgcattga 141  Q
    |||| || |||| ||||||||| ||||    
T  51824743 gtgaggttgagaagatgaatgctttga 51824717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 26756696 - 26756496
Alignment:
Q  11 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 110  Q
    |||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||||| |||||    || ||||| || || |||||||||||||||    
T  26756696 taattccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttg 26756597  T
Q  111 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatt---tactcagcaaagctagtgttcaatatgaaaccaaggtta 207  Q
    |||||||| || |||||||||||||| |||||||| ||||||||||||||| |||| |   || | || ||||||||||| | |||||||||||||||||    
T  26756596 caaggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtac-atatgaaaccaaggtta 26756498  T
Q  208 gt 209  Q
    ||    
T  26756497 gt 26756496  T

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