View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_81 (Length: 254)
Name: NF20816_low_81
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 48181337 - 48181229
Alignment:
| Q |
135 |
aaaccagccttacaagaactgttatnnnnnnngtatatgtgacaaatagagggactaactacgtaattatgccaacannnnnnngtggtatattgatcag |
234 |
Q |
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| T |
48181337 |
aaaccaaccttacaagaactgttataaaaac-gtacatgtgacaaatagagggactaactacgtaattataccaacatttttttgtggtatattgatcag |
48181239 |
T |
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| Q |
235 |
ggtgcctatg |
244 |
Q |
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|||||||||| |
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| T |
48181238 |
ggtgcctatg |
48181229 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 48181458 - 48181416
Alignment:
| Q |
18 |
aaatgttctagagatttttgttgccatgttctataatcaattg |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48181458 |
aaatgttctagagatttttgttgccatgttctataatcaattg |
48181416 |
T |
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