View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_85 (Length: 250)
Name: NF20816_low_85
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_85 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 24937012 - 24937249
Alignment:
| Q |
13 |
aatatccaaaagggtagagacaaaaacgagtcccaaaatagcataaccatatctatctatagctagggtaatgggaaacatattattatattataggatc |
112 |
Q |
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| T |
24937012 |
aatatccaaaagggtagagacaaaaacgagtcccaaaatagcataaccatatctatctatagctagggtaatgggaaacatattattatattataggatc |
24937111 |
T |
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| Q |
113 |
ataaaaagatattccattttagattcttataaattgagcttcatgcaaaatgtaacgttggaagaatccatctgcatggtgctcggattcatgcatatta |
212 |
Q |
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| T |
24937112 |
ataaaaagatattccattttagattcttataaattgagcttcatgcaaaaggtaacgtttgaagaatccatctgcatgctgctcggattcatgcatatta |
24937211 |
T |
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| Q |
213 |
cagtgggtttttagactttagaatgagacacacaaata |
250 |
Q |
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| T |
24937212 |
cagtgggtttttagactttagaataagacacacaaata |
24937249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 24939709 - 24939791
Alignment:
| Q |
107 |
aggatcataaaaagatattccattttagattcttataaattgagcttcatgcaaaatgtaacgttggaagaatccatctgcatg |
190 |
Q |
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| T |
24939709 |
aggatcataagaagatattccattttagatcctaa-agtttcagcttcattctaaatgtaacgtttgaagaatccgtctgcatg |
24939791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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