View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_86 (Length: 250)
Name: NF20816_low_86
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 5027358 - 5027125
Alignment:
| Q |
5 |
gcagagtccaaaatcctctgcgccgcggttagcttatctttcgggattggaccccatgaaggatgccagaaactattatttttaacgcggcggataatgg |
104 |
Q |
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| T |
5027358 |
gcagggtccaaaatcctctgcgccgcggttagcttatctttcgggattggaccccatgaaggatgccagaaactattatttttaacgcggcggagaatgg |
5027259 |
T |
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| Q |
105 |
aagagaatggaatgttgagaagaatttgaagctgttgatgagatgatgaacgccaattaggaaaacccggtgaaactggaagaccttgttggagaatagc |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5027258 |
aagagactggaatgttgagaagaatttgaagctgttgatgagatgatgaacgccaattaggaaaacccggtgacactggaagaccttgttggagaatagc |
5027159 |
T |
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| Q |
205 |
atgaagatcaggtgggaatttaaggttgaatttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5027158 |
atgaagatcaggtgggaatttaaggttgaatttt |
5027125 |
T |
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