View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_89 (Length: 248)
Name: NF20816_low_89
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_89 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 40513222 - 40512988
Alignment:
| Q |
14 |
tgaacttggttggtccattggcattacaatcgtcacacctggttttatcaaaacaaatatggcattgaaggcatatgaagaagaggttggtcaattggtt |
113 |
Q |
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| T |
40513222 |
tgaacttggttggtccattggcattacaatcgtcacacctggttttatcaaaacaaatatggcattgaaggcatatgaagaagaggttggtcaattggtt |
40513123 |
T |
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| Q |
114 |
ccatgcataatattacacctcctttaatttaaacttcaaccaatgcagtttacactactgtgtctgttcttattctaattcatttattcacaacattaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40513122 |
ccatgcataatattacacctcctttaatttaaacttcaaccaatgcagtttacactactgtgtgtgttcttattctaattcatttattcacaacattaac |
40513023 |
T |
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| Q |
214 |
taactattgtaggctagtctgcaatggattccatt |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40513022 |
taactattgtaggctagtctgcaatggattccatt |
40512988 |
T |
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