View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_9 (Length: 674)

Name: NF20816_low_9
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_9
NF20816_low_9
[»] chr3 (17 HSPs)
chr3 (11-655)||(40413253-40413898)
chr3 (11-315)||(38774247-38774560)
chr3 (46-369)||(17762955-17763286)
chr3 (46-369)||(19064275-19064606)
chr3 (396-519)||(12767285-12767408)
chr3 (389-464)||(6588312-6588387)
chr3 (411-464)||(25258082-25258135)
chr3 (411-464)||(27177339-27177392)
chr3 (426-512)||(581019-581105)
chr3 (478-519)||(25543561-25543602)
chr3 (397-464)||(52205049-52205114)
chr3 (371-408)||(6588263-6588300)
chr3 (486-515)||(15513428-15513457)
chr3 (332-369)||(28308708-28308745)
chr3 (427-464)||(54905139-54905176)
chr3 (154-218)||(24572048-24572112)
chr3 (396-464)||(37058995-37059063)
[»] chr2 (15 HSPs)
chr2 (14-342)||(20003871-20004204)
chr2 (11-238)||(32191363-32191590)
chr2 (395-464)||(4422826-4422895)
chr2 (566-633)||(13439262-13439329)
chr2 (425-464)||(15404948-15404987)
chr2 (433-562)||(37028182-37028313)
chr2 (423-485)||(5746752-5746814)
chr2 (398-464)||(12670772-12670838)
chr2 (410-464)||(21488864-21488918)
chr2 (420-464)||(15538962-15539006)
chr2 (422-465)||(37172604-37172647)
chr2 (428-466)||(11279983-11280021)
chr2 (173-218)||(21566575-21566620)
chr2 (399-464)||(34557339-34557404)
chr2 (420-464)||(28314677-28314721)
[»] chr1 (17 HSPs)
chr1 (11-357)||(30626245-30626600)
chr1 (124-209)||(22191820-22191905)
chr1 (120-209)||(3073768-3073857)
chr1 (423-464)||(12082181-12082222)
chr1 (120-209)||(21404850-21404939)
chr1 (428-513)||(34123137-34123222)
chr1 (420-464)||(5760065-5760109)
chr1 (151-202)||(36305827-36305878)
chr1 (151-202)||(36929210-36929261)
chr1 (406-464)||(1831261-1831319)
chr1 (266-349)||(6458319-6458404)
chr1 (423-464)||(17916192-17916233)
chr1 (411-447)||(2930282-2930318)
chr1 (432-464)||(9450235-9450267)
chr1 (426-514)||(16238818-16238906)
chr1 (427-515)||(25484980-25485068)
chr1 (400-464)||(34062655-34062719)
[»] chr7 (27 HSPs)
chr7 (389-563)||(101203-101378)
chr7 (392-514)||(30357821-30357943)
chr7 (392-541)||(5815049-5815198)
chr7 (396-464)||(25690720-25690788)
chr7 (478-562)||(101366-101452)
chr7 (563-651)||(26247341-26247429)
chr7 (390-516)||(6394496-6394622)
chr7 (120-203)||(23826569-23826652)
chr7 (397-561)||(45773203-45773370)
chr7 (46-203)||(9605566-9605723)
chr7 (46-203)||(9833137-9833294)
chr7 (411-464)||(35851977-35852030)
chr7 (14-170)||(39647215-39647372)
chr7 (420-464)||(16780776-16780820)
chr7 (156-211)||(27601958-27602013)
chr7 (393-452)||(41432936-41432995)
chr7 (120-211)||(45201639-45201730)
chr7 (151-209)||(22819756-22819814)
chr7 (427-497)||(48078612-48078682)
chr7 (120-208)||(4615468-4615556)
chr7 (389-464)||(11754699-11754774)
chr7 (390-513)||(41195689-41195812)
chr7 (420-517)||(22600671-22600768)
chr7 (161-209)||(551592-551640)
chr7 (396-464)||(31726655-31726723)
chr7 (486-514)||(38453088-38453116)
chr7 (424-464)||(42094343-42094383)
[»] chr6 (7 HSPs)
chr6 (123-264)||(25029956-25030097)
chr6 (11-94)||(25030093-25030176)
chr6 (274-348)||(2987752-2987826)
chr6 (427-512)||(20694567-20694652)
chr6 (422-463)||(12694027-12694068)
chr6 (154-211)||(28576486-28576543)
chr6 (154-202)||(33804827-33804875)
[»] chr8 (13 HSPs)
chr8 (389-464)||(8238747-8238822)
chr8 (420-515)||(38924426-38924521)
chr8 (422-514)||(29204633-29204725)
chr8 (371-464)||(9030567-9030660)
chr8 (395-464)||(34273143-34273212)
chr8 (151-202)||(7452395-7452446)
chr8 (421-464)||(30370056-30370099)
chr8 (75-190)||(32734430-32734545)
chr8 (396-497)||(10340223-10340324)
chr8 (411-464)||(32729433-32729486)
chr8 (396-515)||(559957-560077)
chr8 (420-464)||(33435413-33435457)
chr8 (161-209)||(37718900-37718948)
[»] chr4 (11 HSPs)
chr4 (420-541)||(24672952-24673074)
chr4 (422-518)||(24671014-24671110)
chr4 (389-554)||(24672638-24672805)
chr4 (398-513)||(40423278-40423393)
chr4 (411-464)||(79528-79581)
chr4 (566-650)||(11793384-11793468)
chr4 (396-463)||(37397965-37398032)
chr4 (420-464)||(5961806-5961850)
chr4 (389-464)||(9954516-9954591)
chr4 (478-549)||(37761725-37761798)
chr4 (396-464)||(25844271-25844339)
[»] chr5 (3 HSPs)
chr5 (389-462)||(7963179-7963252)
chr5 (389-464)||(35895015-35895090)
chr5 (420-464)||(14105982-14106026)
[»] scaffold0223 (1 HSPs)
scaffold0223 (424-464)||(16346-16386)


Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 11 - 655
Target Start/End: Complemental strand, 40413898 - 40413253
Alignment:
Q  11 cacagagaagcgaagcaaggacaagaaaaaatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgtt 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  40413898 cacagagaagcgaagcaaggacaagaaaaaatatatgttgagcaatctctaaccctccacactgagtcacacataactggttattgtgagaaataacgtt 40413799  T
Q  111 gtgcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatct 210  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40413798 gtgcgccatcaaattatctttcgtcggtaaactattctgaaggagtcttaaagcaaaaattgaaacattcaaggaaacctgtttatgccaaataaaatct 40413699  T
Q  211 gtaataacttcagagcttggggcctcctcgctagtaagcatcttgtacacacccgtaaccgccaataggatcaagccgccactgccactgatatgtagaa 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40413698 gtaataacatcagagcttggggcctcctcgctagtaagcatcttgtacacacccgtaaccgccaataggatcaagccgccactgccactgatatgtagaa 40413599  T
Q  311 ttatactacacaaaaatatcgtgaagtaaaattctacactcccctaaaatatcctcctcgttgttcattcccttgagccagcggtagttaactcacgcca 410  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40413598 ttatactgcaaagaaatatcgtgaagtaaaattctacactcccctaaaatatcctcctcgttgttcattcccttgagccagcggtagttaactcacgcca 40413499  T
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagtt 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40413498 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccattgaaaaatgtcgaacgtgagtt 40413399  T
Q  511 aactcccataggtcaaggaaatgagcaa-tttgaaagggagaaaagtaattttttaagtttgatcatcacagtggacaaagagaattcggacaagtgagt 609  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||    
T  40413398 aacttccataggtcaaggaaatgagcaattttgaaagggagaaaactaattttttgagtttgatcatcacaatggacaaagagaattcaaacaagtgagt 40413299  T
Q  610 ttgacaccaaattttcaacctaaagcctaaggaattaagtatggat 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40413298 ttgacaccaaattttcaacctaaagcctaaggaattaagtatggat 40413253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 38774247 - 38774560
Alignment:
Q  11 cacagagaagcgaagcaaggacaaga-aaaaatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgt 109  Q
    |||| |||||||||| | |||||||| ||||| |  ||||||| ||||||||||||||||| |  | ||||||||| || ||||| |||||||| || ||    
T  38774247 cacaaagaagcgaagtagggacaagacaaaaacagatgttgagtagtctctaaccctccacgcccaatcacacatagtttattatcgtgagaaacaatgt 38774346  T
Q  110 tgtgcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
     |||||||| || ||||||||||||| | || ||||||| |||||||||| | |  |||||||||||||| |||| ||| |||||||||||||||||||     
T  38774347 cgtgcgccaccatattatccttcgtcagcaacctgttctgaaggagtctccatgtcaaaattgaaacctttaagggaacatgtttatgccaaataaaata 38774446  T
Q  210 tgtaataacttcagagcttggggcctcctcgctagtaagcatcttgtacacaccc--------gtaaccgccaataggatcaagccgccactgccactga 301  Q
    ||||||| |  |||||||||| |||||||  ||||| | |||| |||||||||||        ||||||||||||||||||||||||||||||||| |||    
T  38774447 tgtaatagcaacagagcttggagcctcctgactagtgatcatcatgtacacacccctgaccgagtaaccgccaataggatcaagccgccactgccattga 38774546  T
Q  302 tatgtagaattata 315  Q
    ||||||||||||||    
T  38774547 tatgtagaattata 38774560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 46 - 369
Target Start/End: Complemental strand, 17763286 - 17762955
Alignment:
Q  46 tgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgtgcgccatcaaattatccttcgtcggtaaactgt 145  Q
    ||||||||||| |||||||||||||||  |||||||||||| || |||| ||||||||||| |||| | ||||||| |||||||||||||||||| ||||    
T  17763286 tgttgagcagtatctaaccctccacacccagtcacacataactgcttatcgtgagaaataatgttgcgtgccatcagattatccttcgtcggtaacctgt 17763187  T
Q  146 tctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctgtaataacttcagagcttggggcctcctcgctagt 245  Q
    |  |||||| |||  || | ||||| | |||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| | ||||    
T  17763186 ttcaaaggaatctacaaaccaaaatagtaaccatcaagggaacctgtttatgccaaataaaatatgtaataacatcagagcttggggtctcctggatagt 17763087  T
Q  246 aagcatcttgtacacaccc--------gtaaccgccaataggatcaagccgccactgccactgatatgtagaattatactacacaaaaatatcgtgaagt 337  Q
     |  |||||||||||| ||        |||||||  | || |||||||||| |||| ||||| || ||||||||||||   || | ||||||||||||||    
T  17763086 gattatcttgtacacatccttgaccgagtaaccgttattatgatcaagccgtcactaccacttatctgtagaattatatcgcaaagaaatatcgtgaagt 17762987  T
Q  338 aaaattctacactcccctaaaatatcctcctc 369  Q
    |||||||||||||||  ||| | |||||||||    
T  17762986 aaaattctacactccattaacaaatcctcctc 17762955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 46 - 369
Target Start/End: Complemental strand, 19064606 - 19064275
Alignment:
Q  46 tgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgtgcgccatcaaattatccttcgtcggtaaactgt 145  Q
    ||||||||||| |||||||||||||||  |||||||||||| || |||| ||||||||||| |||| | ||||||| |||||||||||||||||| ||||    
T  19064606 tgttgagcagtatctaaccctccacacccagtcacacataactgcttatcgtgagaaataatgttgcgtgccatcagattatccttcgtcggtaacctgt 19064507  T
Q  146 tctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctgtaataacttcagagcttggggcctcctcgctagt 245  Q
    |  |||||| |||  || | ||||| | |||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| | ||||    
T  19064506 ttcaaaggaatctacaaaccaaaatagtaaccatcaagggaacctgtttatgccaaataaaatatgtaataacatcagagcttggggtctcctggatagt 19064407  T
Q  246 aagcatcttgtacacaccc--------gtaaccgccaataggatcaagccgccactgccactgatatgtagaattatactacacaaaaatatcgtgaagt 337  Q
     |  |||||||||||| ||        |||||||  | || |||||||||| |||| ||||| || ||||||||||||   || | ||||||||||||||    
T  19064406 gattatcttgtacacatccttgaccgagtaaccgttattatgatcaagccgtcactaccacttatctgtagaattatatcgcaaagaaatatcgtgaagt 19064307  T
Q  338 aaaattctacactcccctaaaatatcctcctc 369  Q
    |||||||||||||||  ||| | |||||||||    
T  19064306 aaaattctacactccattaacaaatcctcctc 19064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 519
Target Start/End: Complemental strand, 12767408 - 12767285
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaa 495  Q
    ||||||||||||| |||||| || |||||| ||||||||||||||||||||| ||||||||||||| || |  || |||   |||| |  || |||||||    
T  12767408 agttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggttaattcacgctgaaaaa 12767309  T
Q  496 tgtcgaacgtgagttaactcccat 519  Q
    ||  ||||||||||||||||||||    
T  12767308 tgcggaacgtgagttaactcccat 12767285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 6588312 - 6588387
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||| |||||||||||||||  ||||| ||  ||||||||||| ||  ||||||||||||||||||||||||||||    
T  6588312 cagcagtagttaactcacgctgacacttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaa 6588387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 25258135 - 25258082
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||    
T  25258135 acacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaa 25258082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 27177339 - 27177392
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  27177339 acactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaa 27177392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 581105 - 581019
Alignment:
Q  426 gttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaa 512  Q
    ||||||| |||||||||||| | |||||||||||||||| ||||| ||| | ||||||  |  ||| ||||| ||||||||||||||    
T  581105 gttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaactcacactgataaatgccgaacgtgagttaa 581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 25543561 - 25543602
Alignment:
Q  478 ttaactaccgttgaaaaatgtcgaacgtgagttaactcccat 519  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  25543561 ttaactaccgctgaaaaatgccgaacgtgagttaactcccat 25543602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 464
Target Start/End: Complemental strand, 52205114 - 52205049
Alignment:
Q  397 gttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||  | ||| || |||||| ||||||||||||| ||||||||||||||||||||||||    
T  52205114 gttaactcacgctgatactttttagatcg-ttcaatcactttt-aagtcgggtcaaccgatcttaaaa 52205049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 6588263 - 6588300
Alignment:
Q  371 ttgttcattcccttgagccagcggtagttaactcacgc 408  Q
    |||||||||||||||| | |||||||||||||||||||    
T  6588263 ttgttcattcccttgacctagcggtagttaactcacgc 6588300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 515
Target Start/End: Complemental strand, 15513457 - 15513428
Alignment:
Q  486 cgttgaaaaatgtcgaacgtgagttaactc 515  Q
    ||||||||||||||||||||||||||||||    
T  15513457 cgttgaaaaatgtcgaacgtgagttaactc 15513428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 28308708 - 28308745
Alignment:
Q  332 tgaagtaaaattctacactcccctaaaatatcctcctc 369  Q
    |||||||||||||||||||||||||| || ||||||||    
T  28308708 tgaagtaaaattctacactcccctaagatctcctcctc 28308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 54905139 - 54905176
Alignment:
Q  427 ttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaa 54905176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 24572112 - 24572048
Alignment:
Q  154 agtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctgtaataac 218  Q
    |||||| || ||||||| ||||||||||| ||||| ||||| ||||| || ||||||||| ||||    
T  24572112 agtctccaaacaaaaatagaaaccttcaaagaaacatgtttgtgccacattaaatctgtagtaac 24572048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 37059063 - 37058995
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||   |||| | || |||||| |||||||| |||||||||||  ||||||||||||||||    
T  37059063 agttaactcactttaacatttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaa 37058995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 20003871 - 20004204
Alignment:
Q  14 agagaagcgaagcaaggacaagaaaa-aatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgt 112  Q
    |||||||| |||||||||||||| || || || ||||||| ||||||||||||| |||||  |||||| ||||  |||| || || |||||||| || ||    
T  20003871 agagaagcaaagcaaggacaagacaagaacatatgttgagaagtctctaacccttcacacccagtcactcatagctgatcatcgttagaaataatgtcgt 20003970  T
Q  113 gcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctgt 212  Q
    ||||||||| |||||||||||||| |||  |||||  ||||||| || |||| ||||| ||||||||||| |||| |||||| ||||||||||||| |||    
T  20003971 gcgccatcatattatccttcgtcgataacttgttccgaaggagtttccaagccaaaatcgaaaccttcaacgaaaactgtttttgccaaataaaatttgt 20004070  T
Q  213 aataacttcagagcttggggcctcctcgctagtaagcatcttgtacacaccc--------gtaaccgccaataggatcaagccgccactgccactgatat 304  Q
    |||||| |||||||||||||| |||| |||||| |||||| |||||| ||||        |||||| ||||||||||||||||||||||     ||||||    
T  20004071 aataacatcagagcttggggcttcctggctagtgagcatcctgtacaaacccgtgtgcgagtaaccaccaataggatcaagccgccact----ttgatat 20004166  T
Q  305 gtagaattatactacacaaaaatatcgtgaagtaaaat 342  Q
    ||||||||||||| || | ||||||| |||||||||||    
T  20004167 gtagaattatactgcaaagaaatatcttgaagtaaaat 20004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 32191363 - 32191590
Alignment:
Q  11 cacagagaagcgaagcaaggacaagaaaa-aatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgt 109  Q
    |||||||||||||||||||||||||| || || |  |||||||||||||||||| ||||||||  |||||||||||| ||||||||| || ||||||       
T  32191363 cacagagaagcgaagcaaggacaagacaataacagatgttgagcagtctctaactctccacacccagtcacacataactgattattgcgataaataatta 32191462  T
Q  110 tgtgcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
     | | ||||||| |||||||||||||||||| | ||||| |||||||||| | | |||||||||||||||||||| |||||||||||||||||| ||||     
T  32191463 cgcgtgccatcagattatccttcgtcggtaaccggttctgaaggagtctctaggaaaaaattgaaaccttcaagggaacctgtttatgccaaattaaata 32191562  T
Q  210 tgtaataacttcagagcttggggcctcct 238  Q
    |||||| || || ||| ||||||||||||    
T  32191563 tgtaat-acatctgagattggggcctcct 32191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 4422895 - 4422826
Alignment:
Q  395 tagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||  |||| || ||||||| |||||||||||||||||||  ||||||||||||||||    
T  4422895 tagttaactcacgccgtcactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaa 4422826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 633
Target Start/End: Original strand, 13439262 - 13439329
Alignment:
Q  566 agtttgatcatcacagtggacaaagagaattcggacaagtgagtttgacaccaaattttcaacctaaa 633  Q
    ||||||||||||||| | ||| |||||||| |  ||||||||||||||||||| ||||||| ||||||    
T  13439262 agtttgatcatcacattagactaagagaatccatacaagtgagtttgacaccacattttcaccctaaa 13439329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 15404948 - 15404987
Alignment:
Q  425 ggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  15404948 ggttcaatcactttttaagtcgggtcaaccgattttaaaa 15404987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 433 - 562
Target Start/End: Original strand, 37028182 - 37028313
Alignment:
Q  433 cactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaac-tcccataggtcaaggaaa 531  Q
    |||||||||| |||||||||||  | |||||| |  ||||||   |||||||||| ||||||||| ||||||||||||||| ||   |  ||||||  ||    
T  37028182 cactttttaaatcgggtcaaccatttttaaaagtgtcaacgtgtgttaactaccgctgaaaaatgccgaacgtgagttaacttctgctgcgtcaagataa 37028281  T
Q  532 tgagcaa-tttgaaagggagaaaagtaatttt 562  Q
    ||| ||| ||||||||||||||||||||||||    
T  37028282 tgaacaattttgaaagggagaaaagtaatttt 37028313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 5746814 - 5746752
Alignment:
Q  423 tcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactac 485  Q
    |||||||||||| ||||||| |||||| |||| ||||||||| || |||||||| ||||||||    
T  5746814 tcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactac 5746752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 464
Target Start/End: Original strand, 12670772 - 12670838
Alignment:
Q  398 ttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||  ||||| || ||||||||||||||| |||||||| ||  ||||||||||||||||    
T  12670772 ttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaa 12670838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 21488864 - 21488918
Alignment:
Q  410 aacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||| || ||||||||||||||| |||||||||| | ||||||||||||||||    
T  21488864 aacacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaa 21488918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 15538962 - 15539006
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||    
T  15538962 agatcggttcaattactttttaagtcggttcaatcgatcttaaaa 15539006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 37172647 - 37172604
Alignment:
Q  422 atcggttcaatcactttttaagtcgggtcaaccgatcttaaaat 465  Q
    |||||||||||||||||||||||| | |||||| ||||||||||    
T  37172647 atcggttcaatcactttttaagtcagttcaaccaatcttaaaat 37172604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 11280021 - 11279983
Alignment:
Q  428 tcaatcactttttaagtcgggtcaaccgatcttaaaatt 466  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  11280021 tcaatcactttttaagtcggttcaaccgattttaaaatt 11279983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 21566620 - 21566575
Alignment:
Q  173 aaaccttcaaggaaacctgtttatgccaaataaaatctgtaataac 218  Q
    |||||||||||| |||||||||| ||||||| |||||| |||||||    
T  21566620 aaaccttcaagggaacctgtttaagccaaattaaatctctaataac 21566575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 34557404 - 34557339
Alignment:
Q  399 taactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||| ||| | || ||||| ||||||||| ||||||| |||| |||| |||||||||||    
T  34557404 taactcacgccgacatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaa 34557339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 28314721 - 28314677
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||||||||| | || | ||||||||||||||    
T  28314721 agatcggttcaatcactttttaaattggttgaaccgatcttaaaa 28314677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 30626245 - 30626600
Alignment:
Q  11 cacagagaagcgaagcaaggacaaga--aaaaatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacg 108  Q
    ||||||||||||||||||||||||||  |||| ||  ||||||||||||||||| |||||||||  | ||||| |||| ||||||||||||||||||| |    
T  30626245 cacagagaagcgaagcaaggacaagacgaaaactaa-tgttgagcagtctctaatcctccacacacaatcacatataactgattattgtgagaaataatg 30626343  T
Q  109 ttgtgcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaat 208  Q
    |||  |||||| | ||||||||| |||||||  |||||   || ||||||| | || ||||| ||||| ||||||| ||||||||||||| |||| ||||    
T  30626344 ttgcacgccattagattatcctttgtcggtaccctgttacgaatgagtctccaggccaaaatcgaaactttcaagggaacctgtttatgcaaaattaaat 30626443  T
Q  209 ctgtaataacttcagagcttggggcctcctcgctagtaagcatcttgtacacaccc--------gtaaccgccaataggatcaagccgccactgccactg 300  Q
     | || |||| |||||| |||||||||| |  ||||| |||||| |||||||||||         |||||| ||||||||||||||||||| ||||||||    
T  30626444 ttatagtaacgtcagagtttggggcctcttgactagtgagcatcctgtacacacccctgattgattaaccgtcaataggatcaagccgccattgccactg 30626543  T
Q  301 atatgtagaattatactacacaaaaatatcgtgaagtaaaattctacactcccctaa 357  Q
    || ||||||||| || | || | ||||||||||||||||||| | |||| |||||||    
T  30626544 atctgtagaattttattgcaaagaaatatcgtgaagtaaaatccaacacacccctaa 30626600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 22191905 - 22191820
Alignment:
Q  124 ttatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||||||||||| || ||| | ||||||||| |||||| ||| ||||||||||| | |||||||||||||||||| |||||    
T  22191905 ttatccttcgtcggtaatctattccataggagtctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaaatc 22191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 3073768 - 3073857
Alignment:
Q  120 caaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||||||||||||||  || || |  ||||||||| | |||||||| || |||||||||| ||||||||| |||||||| |||||    
T  3073768 caaattatccttcgtcggtagtctattttgtaggagtctccacgcaaaaatagagaccttcaagggaacctgtttgtgccaaattaaatc 3073857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 12082181 - 12082222
Alignment:
Q  423 tcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  12082181 tcggttcaatcactttgtaagtcgggtcaaccgatcttaaaa 12082222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 21404850 - 21404939
Alignment:
Q  120 caaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||||||||||||||| || |||   ||||||||| | |||| ||| || ||||||| || |||||||||||||||||| |||||    
T  21404850 caaattatccttcgtcggtaatctattccgtaggagtctccatgcaagaatagagaccttcaggggaacctgtttatgccaaattaaatc 21404939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 513
Target Start/End: Complemental strand, 34123222 - 34123137
Alignment:
Q  428 tcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaac 513  Q
    ||||||||||||||||  || ||||||||| |||||| |  || ||| | |||||| ||| ||||||||||||| |||||||||||    
T  34123222 tcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaatgtcgagcgtgagttaac 34123137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 5760065 - 5760109
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||    
T  5760065 agatcgcttcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 36305827 - 36305878
Alignment:
Q  151 aggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaa 202  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||| |||||||    
T  36305827 aggagtctccacgcaaaaactgaaaccttcaagggaacctgtttgtgccaaa 36305878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 36929210 - 36929261
Alignment:
Q  151 aggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaa 202  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||| |||||||    
T  36929210 aggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgccaaa 36929261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 1831319 - 1831261
Alignment:
Q  406 cgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||| ||||| || ||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  1831319 cgccgacacttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaa 1831261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 349
Target Start/End: Complemental strand, 6458404 - 6458319
Alignment:
Q  266 taaccgccaataggatcaagccgccactgccactgatat--gtagaattatactacacaaaaatatcgtgaagtaaaattctacac 349  Q
    ||||| ||| ||||||| |||| ||| ||||||||||||  |||||||||| || ||   ||||||||||||||||||| ||||||    
T  6458404 taaccaccactaggatctagcctccaatgccactgatatatgtagaattatgctgcaaggaaatatcgtgaagtaaaatcctacac 6458319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 17916233 - 17916192
Alignment:
Q  423 tcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||| |||||||||||||||||| |||| |||||||||||    
T  17916233 tcggtttaatcactttttaagtcggttcaatcgatcttaaaa 17916192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 2930318 - 2930282
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgg 447  Q
    ||||| || ||||||||||||||||||||||||||||    
T  2930318 acactttttagatcggttcaatcactttttaagtcgg 2930282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 9450235 - 9450267
Alignment:
Q  432 tcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||| ||||||||||||||||    
T  9450235 tcactttttaagtcggttcaaccgatcttaaaa 9450267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 514
Target Start/End: Original strand, 16238818 - 16238906
Alignment:
Q  426 gttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaact 514  Q
    ||||||||| ||||||| ||| ||||||| ||||||||| |  || | | | |||||||||| ||||||||||||| |  |||||||||    
T  16238818 gttcaatcattttttaaatcgagtcaaccaatcttaaaagtctcagcatgagttaactaccgctgaaaaatgtcgagcccgagttaact 16238906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 25484980 - 25485068
Alignment:
Q  427 ttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaactc 515  Q
    ||||||||||||||||| |   |||| ||||||||||| |  || ||| | ||||||  || || ||||||||||||||||||||||||    
T  25484980 ttcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagttaactc 25485068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 34062655 - 34062719
Alignment:
Q  400 aactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||  ||||| || | |||||||||||||||||||||||||  ||||| ||| ||||||    
T  34062655 aactcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 389 - 563
Target Start/End: Complemental strand, 101378 - 101203
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgt 488  Q
    ||||||||||||||||| || | |||| || ||||| |||||||||||||||||||| |||||||||||||||||| |  || ||| | ||||||||||     
T  101378 cagcggtagttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaactaccgc 101279  T
Q  489 tgaaaaatgtcgaacgtgagttaactccc-ataggtcaaggaaatgagcaa-tttgaaagggagaaaagtaattttt 563  Q
    ||||||||| ||| | |||||||||||||  | ||||||||  |||||||| |||||||||||||||||||||||||    
T  101278 tgaaaaatgccgagcatgagttaactcccgttgggtcaagg-gatgagcaattttgaaagggagaaaagtaattttt 101203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 30357943 - 30357821
Alignment:
Q  392 cggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttga 491  Q
    |||||| ||| |||| || ||||| || |||| | |||| |||||||||| ||| ||||||| |||||||||| || ||| || | |||||||||| |||    
T  30357943 cggtagctaattcacaccgacactttttagattgattcactcactttttatgtcaggtcaactgatcttaaaaatatcaatgtgagttaactaccgctga 30357844  T
Q  492 aaaatgtcgaacgtgagttaact 514  Q
    |||||||||| ||||||||||||    
T  30357843 aaaatgtcgagcgtgagttaact 30357821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 392 - 541
Target Start/End: Complemental strand, 5815198 - 5815049
Alignment:
Q  392 cggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttga 491  Q
    |||| |||||||||| | | |||| || | || ||||||||||||||||||||| |||||||||||||||||| | |||| || | || |||||||||||    
T  5815198 cggttgttaactcacactagcactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtgccaatgtgagtttactaccgttga 5815099  T
Q  492 aaaatgtcgaacgtgagttaactcccataggtcaaggaaatgagcaattt 541  Q
    ||| ||   | | ||||||||||||| | ||  ||||||||||| |||||    
T  5815098 aaattgataagcatgagttaactcccgttggataaggaaatgagaaattt 5815049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 25690720 - 25690788
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||  ||||| || |||||||||||||||||||||||| ||| ||||||||||||||||    
T  25690720 agttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaa 25690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 101366 - 101452
Alignment:
Q  478 ttaactaccgttgaaaaatgtcgaacgtgagttaactccc-ataggtcaaggaaatgagcaa-tttgaaagggagaaaagtaatttt 562  Q
    |||||||||| ||||||||||||| | |||||||||||||  |||||||||||||||| ||| |||||||||||||| || ||||||    
T  101366 ttaactaccgctgaaaaatgtcgagcatgagttaactcccgttaggtcaaggaaatgaacaattttgaaagggagaagagcaatttt 101452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 563 - 651
Target Start/End: Original strand, 26247341 - 26247429
Alignment:
Q  563 ttaagtttgatcatcacagtggacaaagagaattcggacaagtgagtttgacaccaaattttcaacctaaagcctaaggaattaagtat 651  Q
    |||||||||||||||||  | || |||||||||||  ||||||||||||||||| | ||||||| |||||| | |||||||||| ||||    
T  26247341 ttaagtttgatcatcacgttagataaagagaattcatacaagtgagtttgacactacattttcaccctaaaccttaaggaattaggtat 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 516
Target Start/End: Complemental strand, 6394622 - 6394496
Alignment:
Q  390 agcggtagttaactcacgccaacac-tattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgt 488  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||  |||||||  |||||||||| |  || ||| | ||||||| ||     
T  6394622 agcggtagttaactcacgctaacacgtatt-agatcggttcaatcaccttttaagatgggtcaattgatcttaaaaatgtcagcgtgagttaactatcgc 6394524  T
Q  489 tgaaaaatgtcgaacgtgagttaactcc 516  Q
     || ||||| ||| ||||||||||||||    
T  6394523 agacaaatgccgagcgtgagttaactcc 6394496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 23826652 - 23826569
Alignment:
Q  120 caaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaat 203  Q
    |||||||||||| ||| |||| ||||| |  | ||||||| |||| ||||| |||||||||||||||||||| |||||||||||    
T  23826652 caaattatcctttgtcagtaacctgttttgtaagagtctccaagccaaaatcgaaaccttcaaggaaacctgcttatgccaaat 23826569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 561
Target Start/End: Original strand, 45773203 - 45773370
Alignment:
Q  397 gttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaa-tttaactaccgttgaaaaa 495  Q
    ||||||||||||  ||||| || |||||||||||||||||||||| | ||| |||||| |||||||||    || | ||| || ||||  |  |||||||    
T  45773203 gttaactcacgctgacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaagcgtcagcataagttaaactcacactgaaaaa 45773302  T
Q  496 tgtcgaacgtgagttaactccca-taggtcaaggaaatgagcaa-tttgaaagggagaaaagtaattt 561  Q
    || ||| | |  ||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||    
T  45773303 tgccgagcataggttaactcccactaggtcaaggaaatgagcaattttaaaagggagaaaagcaattt 45773370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 9605723 - 9605566
Alignment:
Q  46 tgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgtgcgccatcaaattatccttcgtcggtaaactgt 145  Q
    ||||||||| |||| |  || ||||||  |||||||||||| ||||||| |||||||| |     | || ||||||||||||||||| || |||| ||||    
T  9605723 tgttgagcaatctccagaccaccacacccagtcacacataactgattatcgtgagaaagagtaccgcgcaccatcaaattatccttcatcagtaacctgt 9605624  T
Q  146 tctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaat 203  Q
    ||  || ||||||| |||| ||||| || |||||||| | |||||| |||||||||||    
T  9605623 tccgaatgagtctccaagccaaaatcgagaccttcaaaggaacctgcttatgccaaat 9605566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 9833294 - 9833137
Alignment:
Q  46 tgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgtgcgccatcaaattatccttcgtcggtaaactgt 145  Q
    ||||||||| |||| |  || ||||||  |||||||||||| ||||||| |||||||| |     | || ||||||||||||||||| || |||| ||||    
T  9833294 tgttgagcaatctccagaccaccacacccagtcacacataactgattatcgtgagaaagagtaccgcgcaccatcaaattatccttcatcagtaacctgt 9833195  T
Q  146 tctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaat 203  Q
    ||  || ||||||| |||| ||||| || |||||||| | |||||| |||||||||||    
T  9833194 tccgaatgagtctccaagccaaaatcgagaccttcaaaggaacctgcttatgccaaat 9833137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 35852030 - 35851977
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| || ||||||||||||||||||| |||||||| ||||||||||||||||    
T  35852030 acacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaa 35851977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 39647372 - 39647215
Alignment:
Q  14 agagaagcgaagcaaggacaagaaaaaat-atgtgttgagcagtctctaaccctccacactgagtcacacataattgattattgtgagaaataacgttgt 112  Q
    |||||||| || ||||||||||| ||||| |  |||||||||||||| || || ||||||  | |||||||||| ||||| | |||||||| ||    ||    
T  39647372 agagaagcaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatacagt 39647273  T
Q  113 gcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaat 170  Q
    || ||| |||||||||||| |||||||| || |||| || ||||||| |||| |||||    
T  39647272 gcaccaacaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaat 39647215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 16780820 - 16780776
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  16780820 agatcggttcaatcactttttaagtcgattcaaccgatcttaaaa 16780776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 27602013 - 27601958
Alignment:
Q  156 tctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctg 211  Q
    |||| |||||| ||| ||||||||||||||||||||||| |||||||| |||||||    
T  27602013 tctccaagcaagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctg 27601958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 41432995 - 41432936
Alignment:
Q  393 ggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaa 452  Q
    |||| ||||||||| | |||||| || |||||||||||||||||||||||||||| ||||    
T  41432995 ggtatttaactcacactaacactttttagatcggttcaatcactttttaagtcggatcaa 41432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 45201639 - 45201730
Alignment:
Q  120 caaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctg 211  Q
    |||||||||||||||| | || || |||| |||||||||| | |||| ||| |||||||||||| ||| |||||| ||| |||| |||||||    
T  45201639 caaattatccttcgtcagcaatctattctgaaggagtctccatgcaagaatagaaaccttcaagaaaatctgtttgtgcaaaattaaatctg 45201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 22819814 - 22819756
Alignment:
Q  151 aggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||| | |||||||| || |||||||||| |||||||||||||||||| |||||    
T  22819814 aggagtctccacgcaaaaatagataccttcaagggaacctgtttatgccaaattaaatc 22819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 497
Target Start/End: Original strand, 48078612 - 48078682
Alignment:
Q  427 ttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatg 497  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||  | ||||||   |||||||||||    
T  48078612 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaaatg 48078682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 4615556 - 4615468
Alignment:
Q  120 caaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaat 208  Q
    ||||||||||||| ||||||| || |||  || ||||||||| |||| ||| || |||||||  | |||||||||||||||||| ||||    
T  4615556 caaattatccttcatcggtaatctattccgaaagagtctcaatgcaagaatagagaccttcagaggaacctgtttatgccaaattaaat 4615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 11754774 - 11754699
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| |||||||||  |||  ||||| || ||||||||||||||||||||||  |||| |||||| |||||||||    
T  11754774 cagcgatagttaactgtcgctgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaa 11754699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 513
Target Start/End: Original strand, 41195689 - 41195812
Alignment:
Q  390 agcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgtt 489  Q
    |||| ||||||||||||||  ||||| || || | | |||||||||||||||||  || ||||| |||||||||| |  |||| | | |||||| ||| |    
T  41195689 agcgttagttaactcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgagttaacttccgct 41195788  T
Q  490 gaaaaatgtcgaacgtgagttaac 513  Q
    |||||||  |||||| ||||||||    
T  41195789 gaaaaataccgaacgggagttaac 41195812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 517
Target Start/End: Original strand, 22600671 - 22600768
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaactccc 517  Q
    |||||| |||||| |||||||||| ||| |||||| ||||||| | | ||||| | | ||||||  |  |||||||| ||||||| ||||||||||||    
T  22600671 agatcgattcaattactttttaagccggttcaaccaatcttaatagtgccaacatgagttaacttacactgaaaaatatcgaacgggagttaactccc 22600768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 551640 - 551592
Alignment:
Q  161 aagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||||||| ||||| || | |||||||||||||||||| |||||    
T  551640 aagcaaaaattgacacctttaaaggaacctgtttatgccaaattaaatc 551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 31726723 - 31726655
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||| || | |||||| || || ||||||||||||  ||||||| ||| ||||||||||||||||    
T  31726723 agttaacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaa 31726655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 38453088 - 38453116
Alignment:
Q  486 cgttgaaaaatgtcgaacgtgagttaact 514  Q
    |||||||||||||||||||||||||||||    
T  38453088 cgttgaaaaatgtcgaacgtgagttaact 38453116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 42094383 - 42094343
Alignment:
Q  424 cggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||||||||| ||| ||||| ||||||||    
T  42094383 cggttcaatcactttttaagtcaggttaaccggtcttaaaa 42094343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 123 - 264
Target Start/End: Complemental strand, 25030097 - 25029956
Alignment:
Q  123 attatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctgtaataacttca 222  Q
    ||||||||||| |||||| ||||| |  ||||||||| | |  ||||| ||||||||||||| ||| |||||||| |||| ||||| ||||||| | | |    
T  25030097 attatccttcgccggtaacctgttttgtaggagtctccaggacaaaatcgaaaccttcaagggaacatgtttatgacaaacaaaatatgtaatagcatga 25029998  T
Q  223 gagcttggggcctcctcgctagtaagcatcttgtacacaccc 264  Q
    |||||||||||||||| | ||||  |||||||||||||||||    
T  25029997 gagcttggggcctcctggttagtgcgcatcttgtacacaccc 25029956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 25030176 - 25030093
Alignment:
Q  11 cacagagaagcgaagcaaggacaagaaaaaatatgtgttgagcagtctctaaccctccacactgagtcacacataattgattat 94  Q
    |||||||||||||||||||||||||| |||| |  ||||||   ||||||||||||||||||  ||||||| |||| |||||||    
T  25030176 cacagagaagcgaagcaaggacaagacaaaacaaatgttgaattgtctctaaccctccacacccagtcacatataactgattat 25030093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 2987826 - 2987752
Alignment:
Q  274 aataggatcaagccgccactgccactgatatgtagaattatactacacaaaaatatcgtgaagtaaaattctaca 348  Q
    ||||||||||| ||| ||||||||||||||||||||||||   | || | ||||||||||||||||||| |||||    
T  2987826 aataggatcaatccgtcactgccactgatatgtagaattaagttgcaaagaaatatcgtgaagtaaaatcctaca 2987752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 20694652 - 20694567
Alignment:
Q  427 ttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaa 512  Q
    |||||||||||||||||| | ||||||| ||||||||| | ||| ||| | ||||||| || |||||||||| || ||||||||||    
T  20694652 ttcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaactatcgctgaaaaatgttgagcgtgagttaa 20694567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 12694068 - 12694027
Alignment:
Q  422 atcggttcaatcactttttaagtcgggtcaaccgatcttaaa 463  Q
    |||||||||||||||||||| |  ||||||||||||||||||    
T  12694068 atcggttcaatcactttttatgctgggtcaaccgatcttaaa 12694027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 28576543 - 28576486
Alignment:
Q  154 agtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatctg 211  Q
    |||||| || ||||||| |||||||||| ||  ||||||||||||||||||| |||||    
T  28576543 agtctccaaacaaaaatagaaaccttcaggggtacctgtttatgccaaataagatctg 28576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 33804827 - 33804875
Alignment:
Q  154 agtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaa 202  Q
    |||||| ||||||||||||| |||||||||| |||||| | ||||||||    
T  33804827 agtctccaagcaaaaattgagaccttcaagggaacctgatgatgccaaa 33804875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 8238747 - 8238822
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||||||  ||||| || ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  8238747 cagcggtagttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaa 8238822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 515
Target Start/End: Original strand, 38924426 - 38924521
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaactc 515  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| |  || ||| | |||||| ||| ||||||||| |||  | ||||||||||    
T  38924426 agatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaatgccgagtgggagttaactc 38924521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 514
Target Start/End: Original strand, 29204633 - 29204725
Alignment:
Q  422 atcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaact 514  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |  || ||||| ||||||  || ||||||||  ||||| | ||||||||    
T  29204633 atcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaataccgaacataagttaact 29204725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 9030567 - 9030660
Alignment:
Q  371 ttgttcattcccttgagccagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||| |||| |  |||||  ||||||||||| || ||||| || |||||| |||||||||||||||| |||| ||||  ||||||||||    
T  9030567 ttgttcatttccttaattcagcgtgagttaactcacaccgacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaa 9030660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 34273212 - 34273143
Alignment:
Q  395 tagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||| | |  ||| || ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  34273212 tagttaactcacactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaa 34273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 7452395 - 7452446
Alignment:
Q  151 aggagtctcaaagcaaaaattgaaaccttcaaggaaacctgtttatgccaaa 202  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||| |||||||    
T  7452395 aggagtctccatgcaaaaactgaaaccttcaagggaacctgtttgtgccaaa 7452446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 464
Target Start/End: Complemental strand, 30370099 - 30370056
Alignment:
Q  421 gatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||||||||||||||||| || ||||||||| ||||||    
T  30370099 gatcggttcaatcactttttaagttggttcaaccgattttaaaa 30370056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 32734430 - 32734545
Alignment:
Q  75 agtcacacataattgattattgtgagaaataacgttgtgcgccatcaaattatccttcgtcggtaaactgttctaaaggagtctcaaagcaaaaattgaa 174  Q
    |||||||||||| ||||| |  ||||||| ||  | | || ||| |||||||||||| |||||||| ||||||  || ||||||| |||| |||||  ||    
T  32734430 agtcacacataactgattgtcatgagaaagaatatcgcgcaccaacaaattatcctttgtcggtaacctgttccgaaagagtctccaagccaaaatgaaa 32734529  T
Q  175 accttcaaggaaacct 190  Q
    || |||||||||||||    
T  32734530 actttcaaggaaacct 32734545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 497
Target Start/End: Original strand, 10340223 - 10340324
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaa 495  Q
    ||||||||||| |  ||||| || |||||| |||||||| ||||||||| |||||  |||||||||||| |  || ||| | ||||||  ||||||||||    
T  10340223 agttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaaaaa 10340322  T
Q  496 tg 497  Q
    ||    
T  10340323 tg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 32729433 - 32729486
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| || ||||| ||||||| | |||||||||||| ||||||||||||||||    
T  32729433 acacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaa 32729486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 515
Target Start/End: Original strand, 559957 - 560077
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttg-aaaa 494  Q
    |||||||||||||  ||| | || ||| || |||||| | ||||||||| || ||||||||| |||||||| ||| ||| | ||||||  ||||| ||||    
T  559957 agttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaaaa 560056  T
Q  495 atgtcgaacgtgagttaactc 515  Q
    ||||| | ||| |||||||||    
T  560057 atgtcaagcgtaagttaactc 560077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 33435457 - 33435413
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| ||| ||| |||||||||||||| ||||||||||||||||    
T  33435457 agatcagtttaattactttttaagtcggttcaaccgatcttaaaa 33435413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 37718900 - 37718948
Alignment:
Q  161 aagcaaaaattgaaaccttcaaggaaacctgtttatgccaaataaaatc 209  Q
    ||||||||||||| ||||| |||| |||||||||||||| ||| |||||    
T  37718900 aagcaaaaattgacacctttaagggaacctgtttatgcctaattaaatc 37718948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 541
Target Start/End: Complemental strand, 24673074 - 24672952
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaactcc-ca 518  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||| | ||||||| | |||||||||| | ||||||  | | ||||||||||||||       
T  24673074 agatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgagttaactaccgctaaaaaataccaagcgtgagttaactcctgt 24672975  T
Q  519 taggtcaaggaaatgagcaattt 541  Q
    | |||||||| ||||||||||||    
T  24672974 tgggtcaagggaatgagcaattt 24672952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 518
Target Start/End: Complemental strand, 24671110 - 24671014
Alignment:
Q  422 atcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatgtcgaacgtgagttaactccca 518  Q
    ||||||||||||||||||| |||||| |||||| |||| |||| ||||| ||| | ||| |||||| | |||||||| || ||||||||||||||||    
T  24671110 atcggttcaatcacttttttagtcggttcaaccaatctaaaaagtaccagcgtgagttatctaccgctaaaaaatgttgagcgtgagttaactccca 24671014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 554
Target Start/End: Complemental strand, 24672805 - 24672638
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgt 488  Q
    |||||||||||||||||||    ||||||| |||||| ||||||||||||||||||||| | |||||||   |||| |  |||||| | ||||||   |     
T  24672805 cagcggtagttaactcacgttggcactatttagatcgattcaatcactttttaagtcggataaaccgataaaaaaagtgtcaacgtgagttaactgttgc 24672706  T
Q  489 tgaaaaatgtcgaacgtgagttaactccc-ataggtcaaggaaatgagcaa-tttgaaagggagaaaa 554  Q
    |||||||| |||| ||||||| |||||||  |  ||||||| ||||||||| ||||||||||||||||    
T  24672705 tgaaaaatatcgagcgtgagtaaactcccgctgagtcaagggaatgagcaattttgaaagggagaaaa 24672638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 40423393 - 40423278
Alignment:
Q  398 ttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaactaccgttgaaaaatg 497  Q
    |||||||||||  ||| | || |||||||||||||||||||||||||||| |||||  ||||||||| |  || | | | |||||| |||||||||||||    
T  40423393 ttaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttgaaaaatg 40423294  T
Q  498 tcgaacgtgagttaac 513  Q
    || | |||||||||||    
T  40423293 tcaagcgtgagttaac 40423278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 79581 - 79528
Alignment:
Q  411 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||||||||    
T  79581 acactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 79528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 650
Target Start/End: Complemental strand, 11793468 - 11793384
Alignment:
Q  566 agtttgatcatcacagtggacaaagagaattcggacaagtgagtttgacaccaaattttcaacctaaagcctaaggaattaagta 650  Q
    ||||||||||||||| | |||||||||||| |  ||||||| ||||||||||| || || | |||||| | ||||||||||||||    
T  11793468 agtttgatcatcacattagacaaagagaatccatacaagtgggtttgacaccacatatttaccctaaaccttaaggaattaagta 11793384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 37398032 - 37397965
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaa 463  Q
    |||||||||| || |||| | || |||||||||||||||||||||||||| | |||||| ||||||||    
T  37398032 agttaactcaggctaacatttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 5961806 - 5961850
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||    
T  5961806 agatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 9954516 - 9954591
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||| ||  ||||| || |||||  |||||| | ||||||||| ||||||| |||||||||||    
T  9954516 cagcggtagttaactcaagctgacactttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaa 9954591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 549
Target Start/End: Complemental strand, 37761798 - 37761725
Alignment:
Q  478 ttaactaccgttgaaaaatgtcgaacgtgagttaactcccatag-gtcaaggaaatgagcaa-tttgaaaggga 549  Q
    |||||||||| |||||||||| ||||||||||||||| || | |  |||||| ||||||||| |||||||||||    
T  37761798 ttaactaccgctgaaaaatgttgaacgtgagttaacttccgttgtatcaagggaatgagcaattttgaaaggga 37761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 25844339 - 25844271
Alignment:
Q  396 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    |||||||||| ||  ||||| || |||| | ||||||| ||||||||| ||| ||||||||||||||||    
T  25844339 agttaactcatgctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaa 25844271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 7963252 - 7963179
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaa 462  Q
    ||||||||||||||||  || |||||| || | |||| ||||||||| |||| |||||||||||||||||||||    
T  7963252 cagcggtagttaactcttgctaacacttttaaaatcgattcaatcacattttcagtcgggtcaaccgatcttaa 7963179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 35895015 - 35895090
Alignment:
Q  389 cagcggtagttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||| ||||| ||||  ||||| || ||||| ||| ||| ||||||||||||||||||| |||||||||||    
T  35895015 cagcggtaggtaacttacgctgacactttttagatcagttaaattactttttaagtcgggtcaatcgatcttaaaa 35895090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 14106026 - 14105982
Alignment:
Q  420 agatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||||||||||||||||||| || |  |||||||||||||    
T  14106026 agatcggttcaatcactttttaagttggtttgaccgatcttaaaa 14105982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 16346 - 16386
Alignment:
Q  424 cggttcaatcactttttaagtcgggtcaaccgatcttaaaa 464  Q
    ||||||||| ||||||||| |||| ||||||||||||||||    
T  16346 cggttcaattactttttaaatcggttcaaccgatcttaaaa 16386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University