View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_90 (Length: 248)
Name: NF20816_low_90
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_90 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 8460079 - 8459899
Alignment:
| Q |
14 |
ctcctaattgagcaaatttctaggaagtaaatagttttcactatgttccttggcaaaaatggctttgaactaattggtacattcatttccttctctaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8460079 |
ctcctaattgagcaaatttctaggaaataaatagttttcactatgttccttggcaaaaatggctttgaactaattggtacattcatttccttctctaagt |
8459980 |
T |
|
| Q |
114 |
gtatgttgaaaagaaatgctccaatcccccatacaaaaatgacgaattttttggacgagaagaacataaggatggagttga |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8459979 |
gtatgttgaaaagaaatgttccaatcccccatacaaaaatgacgaattttttggacgagaagaacataaggatggagttga |
8459899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 8466279 - 8466169
Alignment:
| Q |
84 |
taattggtacattcatttccttctctaagtgtatgttgaaaagaaatgctccaatcccccatacaaaaatgacgaattttttggacgagaagaacataag |
183 |
Q |
| |
|
|||| |||| |||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||| |||| || |||||| |
|
|
| T |
8466279 |
taatcggtaaattcatttccgtctctaagagtatgttgaaaagaaatgttccaattccccatacaaaaatgacaaatttttcggatgagaggagcataag |
8466180 |
T |
|
| Q |
184 |
gatggagttga |
194 |
Q |
| |
|
||||||||||| |
|
|
| T |
8466179 |
gatggagttga |
8466169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 8459849 - 8459907
Alignment:
| Q |
190 |
gttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8459849 |
gttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
8459907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 8466127 - 8466177
Alignment:
| Q |
198 |
agatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
248 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8466127 |
agattccactctaacagttgatttcacttctcatgcaacttctcaactcca |
8466177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 8466370 - 8466306
Alignment:
| Q |
14 |
ctcctaattgagcaaatttctaggaagta---aatagttttcactatgttccttggcaaaaatgg |
75 |
Q |
| |
|
|||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
8466370 |
ctcctaattgagaaaatttctaggaaacataaaacagttttcactatgttccttggcaaaaatgg |
8466306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 52729056 - 52729116
Alignment:
| Q |
92 |
acattcatttccttctctaagtgtatgttgaaaagaaatgctccaatcccccatacaaaaa |
152 |
Q |
| |
|
||||||||| || ||| |||| |||||||||||||| ||| | ||||||||||| |||||| |
|
|
| T |
52729056 |
acattcattcccctctttaagagtatgttgaaaagacatgtttcaatcccccattcaaaaa |
52729116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University