View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_92 (Length: 246)
Name: NF20816_low_92
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29808934 - 29808706
Alignment:
| Q |
1 |
tatatcttgacaaaatctcaattaacatagtcatagtataatccattatatttatttattttgatatagaattgttgttaattgattttgtgatatatgg |
100 |
Q |
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| T |
29808934 |
tatatcttgacaaaatctcaattaacatagtcatagtataatccataatatttctttattttgatatagaattgttgttaattgattttgtgatatatgg |
29808835 |
T |
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| Q |
101 |
tatagggccaagtatggtggcagaagcaagaacttgtgagtcacaaagtcacaaattcaaagggccatgtgctagtgatcacaactgtgcttctgtgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29808834 |
tatagggccaagtatggtggcagaagcaagaacttgtgagtcacaaagtcacaaattcaaagggccatgtgctagtgatcacaactgtgcttctgtgtgc |
29808735 |
T |
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| Q |
201 |
caaacagaacgtttctctggaggacactg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29808734 |
caaacagaacgtttctctggaggacactg |
29808706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 29801382 - 29801258
Alignment:
| Q |
105 |
gggccaagtatggtggcagaagcaagaacttgtgagtcacaaagtcacaaattcaaagggccatgtgctagtgatcacaactgtgcttctgtgtgccaaa |
204 |
Q |
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||||||| |||||||||||||||||| ||||||||| | | |||| |||| |||||||| | ||||| ||||| ||| ||||||||||||||||||| |
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| T |
29801382 |
gggccaattatggtggcagaagcaaggacttgtgagactccaagtaacaacttcaaaggactatgtgtgagtgacaccaattgtgcttctgtgtgccaaa |
29801283 |
T |
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| Q |
205 |
cagaacgtttctctggaggacactg |
229 |
Q |
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| || |||| ||||||||||||| |
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| T |
29801282 |
ctgagggttttcctggaggacactg |
29801258 |
T |
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