View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_93 (Length: 246)
Name: NF20816_low_93
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_93 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 17436812 - 17436573
Alignment:
| Q |
10 |
aatatataatttacacatttcattgtaggttctatgcttaatggaatcttgaacaaaagtctagttttcaa-accagttttattttgaagagnnnnnnnc |
108 |
Q |
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| T |
17436812 |
aatatataatttacacatttcattgtaggttctatgcttaatggaatcttgaacaaaagtctagttttcaagacaagttttattttgaagagtttttttc |
17436713 |
T |
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| Q |
109 |
-ctcaatattttccactataaataaccaatggcgaccattcttatattggaactcatattaactatttcaactaacctctttctttttcctta-nnnnnn |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
17436712 |
tctcaatattttccactataaataaccaatggcaaccattcttatattggaactcatattaactattgcgactaacctctttctttttccttattttttt |
17436613 |
T |
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| Q |
207 |
nnnataagaggctagtcaattttaatcacaatcccaattc |
246 |
Q |
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| T |
17436612 |
tttataagaggctagtcaattttaatcacaatcccaattc |
17436573 |
T |
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