View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_94 (Length: 241)
Name: NF20816_low_94
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 794703 - 794500
Alignment:
| Q |
20 |
aatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttcttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794703 |
aatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttcttc |
794604 |
T |
|
| Q |
120 |
atagcactttaaatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttccaattgtttccctgtgcaaaaatatagtgttgtcc |
219 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
794603 |
ataacactttaaatttacaattaaatgaaaacgaaatatgatttcagttctgatatattctcttccaattgtttccttgtgcaaaaatatagtgttgtcc |
794504 |
T |
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| Q |
220 |
ttga |
223 |
Q |
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|||| |
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| T |
794503 |
ttga |
794500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 14257331 - 14257240
Alignment:
| Q |
27 |
ctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttcttc |
119 |
Q |
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||||||||||| | ||| | ||| |||||||| |||||||||| ||||| || |||||||| ||| ||||| |||||||||||| |||||| |
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| T |
14257331 |
ctataaattagatctatggattaacataattttacatcacaac-tcaattactattctttcttttttgtttagttttttattgtttgttcttc |
14257240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4056237 - 4056034
Alignment:
| Q |
20 |
aatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttcttc |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4056237 |
aatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattggttcttcttc |
4056138 |
T |
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| Q |
120 |
atagcactttaaatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttccaattgtttccctgtgcaaaaatatagtgttgtcc |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4056137 |
atagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtcc |
4056038 |
T |
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| Q |
220 |
ttga |
223 |
Q |
| |
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|||| |
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|
| T |
4056037 |
ttga |
4056034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 25067570 - 25067773
Alignment:
| Q |
20 |
aatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttcttc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25067570 |
aatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattggttcttcttc |
25067669 |
T |
|
| Q |
120 |
atagcactttaaatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttccaattgtttccctgtgcaaaaatatagtgttgtcc |
219 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25067670 |
atagcactttagatttacaactaaatgaaaacgaaatatgatttcagttctgatatattctcttcaaattgtttccctgtgcaaaaatatagtgttgtcc |
25067769 |
T |
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| Q |
220 |
ttga |
223 |
Q |
| |
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|||| |
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|
| T |
25067770 |
ttga |
25067773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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