View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_96 (Length: 240)
Name: NF20816_low_96
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_96 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17923616 - 17923858
Alignment:
| Q |
1 |
atgataacattgacttaacaaactataaactttacacttcaattctaaacaagtctgtgtcgacttcaagagcaattgctacnnnnnnn----ccatcat |
96 |
Q |
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| T |
17923616 |
atgataacattgacttaacaaactataaactttacacttcaattctaaacaagtctgtgtcgacttcaagagcaattgctacaaaaaaaaaaaccatcat |
17923715 |
T |
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| Q |
97 |
ataaacaaaataaaatacgaatttggagaacttaaaaagacgatactaacacaccgttgtaggtgagatttagcatgatcaacgttgtgggaatggtgaa |
196 |
Q |
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| T |
17923716 |
ataaa-aaaataaaatactaatttgaagaacttaaaaagacgatactaacacatccttgtaggtgagatttagcatgatgaacgttgtgggaatggtgaa |
17923814 |
T |
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| Q |
197 |
gaaggatattggcgatacgaagacgagttttgacttcgatgatt |
240 |
Q |
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| T |
17923815 |
gaaggatagtggcaatacgaagacgagttttgacttcgatgatt |
17923858 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 32359144 - 32359244
Alignment:
| Q |
133 |
aagacgatactaacacaccgttgtaggtgagatttagcatgatcaacgttgtgggaatggtgaagaaggatattggcgatacgaagacgagttttgactt |
232 |
Q |
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|||| |||||||||||| |||| |||||||||||||| |||| | |||| || ||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
32359144 |
aagaagatactaacacaacgttcgaggtgagatttagcgtgattagcgttatgagaatgatgaagaaggattgtggcgatacgaagacgagttttgactt |
32359243 |
T |
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| Q |
233 |
c |
233 |
Q |
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| T |
32359244 |
c |
32359244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 33581887 - 33581936
Alignment:
| Q |
184 |
tgggaatggtgaagaaggatattggcgatacgaagacgagttttgacttc |
233 |
Q |
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| T |
33581887 |
tgggaatgatgaagaaggattgtggcgattcgaagacgagttttgacttc |
33581936 |
T |
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