View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_97 (Length: 240)
Name: NF20816_low_97
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_97 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 42454573 - 42454351
Alignment:
| Q |
18 |
gacacactatccctcactctgtccaatttgacctgagcaaccaccagatcttcttcacagtattcacttcattgcaaacctcacgaaaaccttggagtca |
117 |
Q |
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| T |
42454573 |
gacacactatccctcactctgtccaatttgacctgagcaaccaccagatcttcttcacagtattcacttcattgcaaacctcacgaaaaccttggagtca |
42454474 |
T |
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| Q |
118 |
aaatgcaatctaacctccaattttactagatagggttgcataccatttaggtggctggtccctatctactcccagagtggagttgtatatgctcaaaatg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454473 |
aaatgcaatttaacctccaattttactagatagggttgcataccatttaggtggctggtccctatctactcccagagtggagttgtatatgctcaaaatg |
42454374 |
T |
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| Q |
218 |
tggccttcatgtccttttcagat |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
42454373 |
tggccttcatgtccttttcagat |
42454351 |
T |
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