View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_99 (Length: 238)
Name: NF20816_low_99
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_99 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 37597928 - 37598099
Alignment:
| Q |
76 |
atattacattagtgaggcaggtatggcccatcaaaactgtaacgatatttctagtgcatat------cagtgcgttaggagtctctttccatattgcatc |
169 |
Q |
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| T |
37597928 |
atattacattagtgaggcaggtatggcccatcaaaactgttacgatatttctagtgcatatatatatcagtgcgttaggagtctctttccatattgcatc |
37598027 |
T |
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| Q |
170 |
tac---catcagcaaaattaaatacaaggaccagtggaatcagtcaatccttcaaaaagttcttccaaaacc |
238 |
Q |
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| T |
37598028 |
tactaccatcagcaaaattaaatacaaggaccagtggaatcagtcaatccttcaaaaagttcttccaaaacc |
37598099 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 37597862 - 37597905
Alignment:
| Q |
35 |
tgaaatattacatatgaaattaaacataaatattagaaacaata |
78 |
Q |
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| T |
37597862 |
tgaaatattacatatgaaattaaacataaatattagaaacaata |
37597905 |
T |
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