View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_10 (Length: 467)
Name: NF20817_high_10
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 44722306 - 44722586
Alignment:
| Q |
1 |
atcattggaggattagatcaaactaatagggactaaattcattgaacttaaatttctaataaactgaagaattatatttgcaaccagaatactgatggtg |
100 |
Q |
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| T |
44722306 |
atcattggaggattagatcaaactaatagggactaaattcattgaacttaaatttctaataaactgaagaattatatttgcaaccagaatactgatggtg |
44722405 |
T |
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| Q |
101 |
cattagttgtgggcaaagggcttgtccaaccaatgatagggcaattgttggagaaaatgatcacaaaaagtattatatttgcaaccagaattgttgcaac |
200 |
Q |
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| T |
44722406 |
cattagttgtgggcaaagggcttgtccaaccaatgatagggcaattgttggagaaaatgatcac-aaaagtattatatttgcaactagaattgttgcaac |
44722504 |
T |
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| Q |
201 |
caggattgttgcaaccactcaacattatgtatcaaaagcaagtgtttcgaatgtatattacaaccacttcatatttcttggt |
282 |
Q |
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| T |
44722505 |
caggattgttgcaaccactcaacattatgtatcaaaagcaagtgtttcaaatgtatattacaaccacttcatatttcttggt |
44722586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 297 - 452
Target Start/End: Original strand, 44722619 - 44722774
Alignment:
| Q |
297 |
tatatataattgactgacttgtgttcacgcaatcccctattttgtatgctttaaatagataccatctcatttgataaagctagctctctaagcatggaca |
396 |
Q |
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| T |
44722619 |
tatatataattgactgacttgtgttcatgcaatcccctattttgtatgctttaaatagataccatctcatttgataaagctagctctctaagcatggaca |
44722718 |
T |
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| Q |
397 |
atctaagtcttgatcatttgagtggataacgaggctttaagataggcagtctagat |
452 |
Q |
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| T |
44722719 |
atctaagtcttgatcatttgagtggataacgaggctttaagataggcagtctagat |
44722774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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