View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_11 (Length: 467)
Name: NF20817_high_11
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 7099533 - 7099989
Alignment:
| Q |
1 |
aagagttaagtatctttagataagatttttggattatgaaacacatttgaaataccttggttagtgagaccttattagtggcaggatcaaagatttctct |
100 |
Q |
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| T |
7099533 |
aagagttgagtatctttagataatatttttggattatgaaacacatttcaaataccttggttagtgagatcttattagtggcgggatcaaagatttctct |
7099632 |
T |
|
| Q |
101 |
cttgttttctcttgggatctctaggacggttcaatggcttgatgaatgggtaaaattattgattgttgtttgtgaccttttggatctaatttcttgtaac |
200 |
Q |
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| T |
7099633 |
cttgttttctcttaggatctctacgacggttcaatggcttgatgaatgggtaaaattattgattgttgtttgtgaccttttggatctaatttcgtgtaac |
7099732 |
T |
|
| Q |
201 |
ctcatgtatcactcattttatagaagattgtggagttactctctccccccatacataggtcatattaggttgagttgggtaaacaaccatcgatgtgttt |
300 |
Q |
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| T |
7099733 |
ctcatgtatcactcattttatagaggactgcggagttactctctccccccatacataggtcatattaggttgagttgggtaaacaatcatcgatgtgttt |
7099832 |
T |
|
| Q |
301 |
tacttcaatatttcttaggcaacaaactcaataagagtaataatatatcctcatcatcaaaatttacttcaatatttttagatcatcaataaatttgttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7099833 |
tacttcaatatttcttaggcaacaaactcaataagagtaataatatatcctcatcatcaaaatttacttcaatatttttatatcatcaataaatttgttc |
7099932 |
T |
|
| Q |
401 |
aattgtgtaggttgttccactaaagattttgactctaccatcttaaatgagtaaagt |
457 |
Q |
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| T |
7099933 |
aattgcgtaggttgttccactaaagattttgactctaccatcttaaatgagtaaagt |
7099989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 33079792 - 33079672
Alignment:
| Q |
180 |
ttggatctaatttcttgtaacct-catgtatcactcattttatagaagattgtggagttactctctccccccatacataggtcatattaggttgagttgg |
278 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||| |||| ||||| ||| | |||||||||||| | ||||||||||| ||| || ||| |
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| T |
33079792 |
ttggatctaatttcttgtaacctccttgtatcactaatttcatagtggattggagagctgatctctccccccagatgtaggtcatattgggtcgaactgg |
33079693 |
T |
|
| Q |
279 |
gtaaacaaccatcgatgtgtt |
299 |
Q |
| |
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|| ||||| ||| |||||||| |
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| T |
33079692 |
gttaacaagcattgatgtgtt |
33079672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 163440 - 163480
Alignment:
| Q |
417 |
ccactaaagattttgactctaccatcttaaatgagtaaagt |
457 |
Q |
| |
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|||||| |||||||||||||||||||| |||||| |||||| |
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| T |
163440 |
ccactatagattttgactctaccatctgaaatgaataaagt |
163480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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