View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_15 (Length: 416)
Name: NF20817_high_15
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 26879439 - 26879060
Alignment:
| Q |
20 |
cgcggatcatcactgagatcctgttaaaattcctcactcatattgtgtcttgtgatttaatgtgcagagtttgtgcaagttctttctaattctcacctga |
119 |
Q |
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| T |
26879439 |
cgcggatcatcactgtgatcctgttaaaattcctcactcttattgtgtcttgtgatttaatgtgcagagtttgtgcaagttctttctaattctcacctga |
26879340 |
T |
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| Q |
120 |
agatgcgtgtttgggagcgtggagcaggttagaacatcaatttttcaggctgtgtctgattggtattgttagcgtggttagggaaagtattaaggtgtcg |
219 |
Q |
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| T |
26879339 |
agatgcgtgtttgggagcatggagcaggttagaacatcaatttttcgggctgtgtctgattggtattgttagcgtggttagggaaagtattaaggtgtcg |
26879240 |
T |
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| Q |
220 |
cagaactatcgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccacatttctt-aaaaccacacatgtt |
318 |
Q |
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| T |
26879239 |
cagaactattgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccacatttcttaaaaaccacacgtgtt |
26879140 |
T |
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| Q |
319 |
ttcggaagtgcacttctaggtggat-nnnnnnnccatgnnnnnnnngtctggaaggacatatgtagacgacataaaaact |
397 |
Q |
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| T |
26879139 |
ttcggaagtgcacttctaggcggataaaaaaaaccatgttttttttgtctggaaggacatatgtagacgacataaaaact |
26879060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 40248893 - 40248742
Alignment:
| Q |
48 |
attcctcactcatattgtgtcttgtgatttaatgtgcagagtttgtgcaagttctttctaattctcacctgaagatgcgtgtttgggagcgtggagcagg |
147 |
Q |
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| T |
40248893 |
attcctcactcttactgtttcttgtgatttaacgtgcagagtttgtgcaagttctttctaattctcacctgaagatgcgtgtttgggagcgtggtgcagg |
40248794 |
T |
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| Q |
148 |
ttagaacatcaatttttcaggctgtgtctgattggtattgttagcgtggtta |
199 |
Q |
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||||| |||| | ||| ||| |||||| |||||||||||||||| ||||||| |
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| T |
40248793 |
ttagagcatctaatttccagactgtgtttgattggtattgttagtgtggtta |
40248742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 40247225 - 40247185
Alignment:
| Q |
219 |
gcagaactatcgtattatggatctttgcccctttgaaatac |
259 |
Q |
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| T |
40247225 |
gcagaactagtgtattatggctctttgcccctttgaaatac |
40247185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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