View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_19 (Length: 362)
Name: NF20817_high_19
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6424217 - 6423866
Alignment:
| Q |
1 |
catgtgtcggtgtcagacaccaagcatgccttcgatcagaattgtcggtgctacagtggtgtcatgtgtctactaaaaataacaaaataaaacacaaacc |
100 |
Q |
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| T |
6424217 |
catgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctacagcggtgtcatgtgtctacaaaaaataacaaaataaaacacaaacc |
6424118 |
T |
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| Q |
101 |
ttggtcagaggattcaagaacagaaggattgaggtgagagtggaaccaacagaaagagaatttagagcaacgaccccccatgaagaagaataagatgcaa |
200 |
Q |
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| T |
6424117 |
ttggtcagaggattcaagaacagaaggattgaggtgagagtggaaccaacagaaagagaatttagagcaacgaccccccatgaagaagaataagaagcaa |
6424018 |
T |
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| Q |
201 |
gtgaaggtttaaggactaatgaagaatgtttagacagtgttcattgttgtgagcccatttggtctatgagtactcttgttgtgtttatgttatatttgtt |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6424017 |
gtgaaggttgaaggactaatgaagaatgtttagacagtgttcattgttgtgagcccatttggtctatgagtactcttgttgtgtttatgttatgtttgtt |
6423918 |
T |
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| Q |
301 |
tcaacataaatggataaaagttgggaatgcaaaaggttattaaggtgatgat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6423917 |
tcaacataaatggataaaagttgggaatgcaaaaggttactaaggtgatgat |
6423866 |
T |
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