View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_26 (Length: 258)
Name: NF20817_high_26
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 33945717 - 33945570
Alignment:
| Q |
56 |
gtaccgcatgaccaatcaataaggtaccattcaattcatattttagtcttgtgttcatttgactttaacccactaataatattttctgttggggatgaat |
155 |
Q |
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| T |
33945717 |
gtaccgcatgaccaatcaataaggtaccattcaattcatattttagtcttgtgttcatttgactttaacccactaataatattttctcttggggatgaat |
33945618 |
T |
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| Q |
156 |
ccagcatcatcattaagaaaataattaaaataattttttatccgtaaa |
203 |
Q |
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| T |
33945617 |
ccagcatcatcattaagaaaataattaaaataattttttatctgtaaa |
33945570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33946915 - 33946859
Alignment:
| Q |
1 |
cataggtaactgcaatttcaaaggagtaagaaaaacttaaaattaattgcttttggt |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33946915 |
cataggtaactgcaatttcaaaggagtaagaaaaacttaaaattaattgcttttggt |
33946859 |
T |
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